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Table IV (B) Water involved in the interaction inside active site cleft of the enzyme-inhibitor complexes

From: Insight to structural subsite recognition in plant thiol protease-inhibitor complexes : Understanding the basis of differential inhibition and the role of water

Papain + E-64-C[32, 33]

Distances in Ã…

Subsites of inhibitor

   

in interaction

E-64-C (I):O18

232:OH2

2.98**

P1

E-64-C(II):O18

389:OH2

2.60**

P1

Caricain + E-64-C

  

E-64-C:O18

1468:OH2

3.47**

P1

E-64-C:O17

1520:OH2

3.46

P1

Chymopapain + E-64-C

  

E-64-C:O18

1464:OH2

2.69**

P1

E-64-C:O9

1317:OH2

3.20

P2

Actinidin + E-64-C

  

E-64-C:O18

1489:OH2

2.85**

P1

E-64-C:O9

1152:OH2

3.32

P2

E-64-C:O1

1454:OH2

3.21

P1

CalotropinDI + E-64-C

  

E-64-C:O18

445:OH2

3.09**

P1

E-64-C:O18

441:OH2

3.29**

P1

E-64-C:O17

455:OH2

3.21

P1

E-64-C:O9

1299:OH2

2.84

P2

E-64-C:O5

1406:OH2

3.41

P1

1299:OH2

1406:OH2

3.16

 

Papain + E-64[19]

  

E-64:O18

217:OH2

2.67**

P1

E-64:N17

216:OH2

2.45*

P3

Actinidin + E-64[20]

  

E-64:O18

582H:OH2

2.81**

P1

E-64:N17

257H:OH2

3.23*

P3

E-64:N15

54H:OH2

3.01

 

E-64:N17

54:OH2

3.57

P3

E-64:N15

54:OH2

3.01

P3

Caricain + E-64[21]

  

E-64:O18

310H:O

2.98**

P1

Chymopapain + E-64

  

E-64:O18

302:OH2

3.21**

P1

E-64:O9

1357:OH2

2.85

P2

E-64:N18

1128:OH2

3.14

P3

CalotropinDI + E-64

  

E-64:O18

196:OH2

2.91**

P1

E-64:O17

196:OH2

3.39

P1

E-64:O9

1370:OH2

2.94

P2

E-64:N15

1310:OH2

3.43*

P3

E-64:N18

1625:OH2

3.25

P3

E-64:N18

1363:OH2

3.06

P3

E-64:N17

1310:OH2

3.22*

P3