Skip to main content

Advertisement

Table 2 Heterodimeric interfaces of M protein

From: Prediction of protein-protein interactions in dengue virus coat proteins guided by low resolution cryoEM structures

Interacting chains Immature at neutral pH (3C6D) Immature at acidic pH (3C6R) Mature at neutral pH (1P58)
DA L56 (8.2; h), I64 (7.9; h) T48 (4.7; m), L56 (8.1; h), I64 (5.8; m) L128 (8.5; h), M136 (8.6; h), I161 (7.9; h), M165 (8.6; h)
DB - - -
DC - - -
EA - - -
EB L56 (8.2; h), I64 (7.9; h) T48 (4.7; m), L56 (8.1; h), I64 (5.8; m) L128 (8.5; h), M136 (8.6; h), I161 (7.9; h), M165 (8.6; h)
EC - E60 (5.4; m) E114 (6.3; h)
FA - - -
FB - E60 (5.7; m) E114 (6.3; h)
FC T48 (3.7; m), L56 (8.2; h), I64 (6.0; h) T48 (4.7; m), L56 (8.1; h), I64 (5.8; m) L128 (8.5; h), M136 (8.6; h), I161 (7.9; h), M165 (8.6; h)
  1. List of residues of M protein chains (D, E and F) participating in the interactions with E glycoprotein chains (A, B and C); confidence scores are given in the brackets where "h" stands for high, "m" for medium while "l" for low confidence