Figure 5
RMSDs with respect to the starting structures in the simulations of modified polyamide + copper nuclease -DNA (polyamide + copper nuclease -DNA (black), polyamide + copper nuclease (blue), and DNA alone (magenta)), RDF curves of the distal O d atom of OOH-C1'H atom (pink)/C4'H atom (navy) of sugars, probability distributions (the histogram bin width of 0.1 Å), and integration plots of probabilities of O d -C1'H (pink) and O d -C4'H (navy) distances: (A), (C), (E), (G) for modified cyclic polyamide + [Cu(BPA)OOH]+ -d(AATATCCACCTGCA) 2 (CPDγTail-BPA) and (B), (D), (F), (H) for modified cyclic polyamide + [Cu(IDB)OOH] + -d(CGCTAACAGGC) 2 (CPD γ Tail-IDB).