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Table 1 Test clusters for evaluating functional coherence

From: Identification of recurring protein structure microenvironments and discovery of novel functional sites around CYS residues

PROSITE pattern min # proteins max # proteins
COPPER_BLUE 6 61
PROTEIN_KINASE_ST 9 1303
ADH_SHORT 10 262
4FE4S_FERREDOXIN 11 169
TRYPSIN_SER 13 399
EF_HAND 19 1248
  1. We tested the functional coherence measure using clusters associated with six functional motifs from PROSITE. The minimum number of proteins is the smallest cluster size we used for that particular PROSITE pattern, derived from training sets from existing FEATURE models. The maximum number is the total number of proteins in Swiss-Prot annotated to that pattern.