Skip to main content

Advertisement

Springer Nature is making SARS-CoV-2 and COVID-19 research free. View research | View latest news | Sign up for updates

Table 4 Ranking ZDOCK2.3 decoys (IRMSD ≤4Å) by the jackknife test

From: Designing coarse grained-and atom based-potentials for protein-protein docking

Complexa Rankb
  ADPs-II c Zdock2.3 DARS ACE
1AK4 - - 950 1744
1B6C 95 16 9 178
1BVK 12 268 610 -
1DQJ - 1490 - -
1EWY 164 18 42 364
1FC2 484 - 24 797
1GHQ - - - 1308
1HIA 21 653 122 -
1IJK 1131 - 368 -
1KLU - - - -
1AVX 5 46 6 59
1D6R 1840 567 - -
1E96 39 399 42 490
1F34 13 26 666 5
1GCQ 1030 - 1057 1040
1GRN 210 102 - -
1I4D 84 403 965 616
1KXP 91 7 1 200
1NSN 53 445 - -
1SBB - - - -
1ACB 113 55 24 98
1AKJ 592 40 - -
1AY7 120 100 - -
1DFJ 37 1 - -
1EAW 65 13 33 309
1FQ1 - - - -
1GP2 4 389 58 1681
1I9R 184 14 589 -
1UDI 27 13 1 1
2PCC 203 193 821 120
1AHW 23 14 - -
1BUH 14 - 555 -
1E6E 2 103 44 520
1ML0 10 1 9 32
1PPE 3 1 1 1
1QFW 544 74 - -
1TMQ 9 126 12 22
1WEJ 3 42 1047 -
2JEL 307 86 76 579
7CEI 15 1 920 708
1ATN - - - -
1BJ1 6 18 18 85
1CGI 71 247 13 24
1F51 1 11 251 797
1KAC 121 1389 - -
1KKL 283 - 1 222
1NCA 4 4 - -
1QA9 687 - - -
2SNI 17 618 1 2
1RLB 48 302 5 7
  1. a-Complex PDB code.
  2. b-Rank of the lowest energy near-native decoy with IRMSD ≤4Å out of 54000 predictions.
  3. c-Jackknife test (see Methods)
  4. -- No near-native decoy identified among the 2000 best ranked decoys.