Table 1 Protein codes and loop locations of test set of protein
From: Modeling of loops in proteins: a multi-method approach
Protein codes and loop locations of test set of protein. | |
|---|---|
loop length | PDB codes and loop ranges |
4 | 7rsa 47-50, 4gcr 116-119, 2tgi 72-75, 2exo 161-164, 1xif 82-85, 1tml 42-45, 1tib 46-49, 1thw 194-197, 1rcf 111-114, 1ppn 42-45, 1plc 74-77, 1pbe 117-120, 1nfp 37-40, 1frd 59-62, 1cbs 21-24, 1ads 99-102, 1aaj 82-85 |
5 | 7rsa 75-79, 2hbg 37-41, 2cmd 188-192, 1vcc 63-67, 1tml 147-151, 1tca 157-161, 1sbp 181-185, 1prn 187-191, 1noa 88-92, 1nfp 95-99, 1nar 56-60, 1kuh 37-41, 1hbq 158-162, 1hbg 19-23, 1frd 83-87, 153l 131-135 |
6 | 5p21 104-109, 3pte 256-261, 3pte 131-136, 2ayh 81-86, 1tca 94-99, 1tca 38-43, 1rge 73-78, 1noa 25-30, 1mrp 233-238, 1gca 100-105, 1ede 180-185, 1cbs 66-71, 1brt 253-258, 1brt 174-179, 1ads 150-155, 1ads 149-154 |
7 | 5p21 83-89, 2pth 95-101, 1tml 20-26, 1tca 132-138, 1php 135-141, 1mbd 17-23, 1lif 64-70, 1iab 142-148, 1hbg 46-52, 1gca 196-202, 1edg 309-315, 1dad 116-122, 1brt 226-232, 1bkf 64-70, 1ads 186-192 |
8 | 2ayh 194-201, 1tml 187-194, 1thw 18-25, 1prn 150-157, 1nwp 84-91, 1nls 97-104, 1nar 192-199, 1hbq 31-38, 1arb 136-143, 1alc 34-41, 1ads 274-281 |
9 | 3pte 107-115, 2ayh 169-177, 1xnb 133-141, 1xnb 116-124, 1php 91-99, 1nls 131-139, 1ede 257-265, 1arb 168-176, 1aac 58-66 |
10 | 7rsa 87-96, 7rsa 33-42, 7rsa 110-119, 2cmd 57-66, 1whi 47-56, 1tca 23-32, 1scs 65-74, 1ppn 190-199, 1plc 42-51, 1mrj 173-182, 1ixh 84-93, 1gvp 49-58, 1fkf 63-72, 1arb 41-50, 1amp 181-190, 1ads 171-180, 1ads 170-179, 135l 18-27 |
11 | 3pte 91-101, 2pth 8-18, 1rcf 122-132, 1ixh 120-130, 1dad 42-52, 153l 154-164 |
12 | 2ayh 21-32, 1ixh 160-171, 1bkf 9-20, 1arb 74-85, 153l 98-109 |
16 | 1tml 73-88, 1tml 219-234, 1tca 184-199, 1rge 37-52, 1prn 106-121, 1nar 10-25, 1iab 136-151, 1frd 33-48, 1edg 233-248, 1edg 167-182, 1brt 57-72, 1amp 98-113, 1ads 210-225 |
18 | 1tml 73-90, 1tml 219-236, 1tca 184-201, 1prn 106-123, 1nar 10-27, 1iab 136-153, 1byt 807-824, 1byt 700-717, 1byt 359-376, 1byt 230-247, 1bst 57-74, 1bst 129-146, 1b57 209-226, 1awj 2-19, 1amp 98-115, 1ahj 101-118, 1ads 210-227, 1acc 36-53, 1acc 183-200 |
20 | 1br4 390-409, 1br4 349-368, 1br4 291-310, 1br2 246-265, 1azx 362-381 |
22 | 1tml 219-240, 1prn 106-127, 1nar 10-31, 1kk7 291-312, 1jez 117-138, 1itk 179-200, 1itk 157-178, 1e04 351-372, 1clq 380-401, 1br4 71-92, 1br4 256-277, 1b3k 322-343, 1aoa 182-203 |
23 | 1nfb 253-275, 1lzj 2-24, 1izl 21-43, 1i50 46-68, 1dzg 367-389 |
24 | 1uoz 224-247, 1mnd 277-300, 1miu 93-116, 1i19 415-438, 1hfb 86-109 |
25 | 2hs0 319-343, 2gah 437-461, 2fqf 293-317, 2e4y 311-335, 1zba 16-40, 1tml 219-243, 1qme 127-151, 1prn 106-130, 1kmh 117-141, 1eah 247-271, 1dms 596-620, 1dhx 376-400, 1dhx 11-35 |