From: Discrimination of thermophilic and mesophilic proteins

Numerical index | Thermophile (127 pairs) | Hyperthermophile (122 pairs) |
---|---|---|

Contact Network Derived Quantities
| ||

coordination number (no cutoff) | 0.559 | 0.689 |

clustering coefficient (no cutoff) | 0.551 | 0.672 |

characteristic path (no cutoff) | 0.520 | 0.631 |

Combined Sequence and Structure Including Threading Potentials
| ||

total count 400 over-rep quads/residue | 0.850 | 0.943 |

4-body potential/residue (20Å cutoff) | 0.858 | 0.844 |

4-body potential/residue (no cutoff) | 0.843 | 0.852 |

4-body potential/res (hyper only, no cutoff) | ----- | 0.820 |

4-body potential/res (meso only, no cutoff) | 0.732 | 0.803 |

4-body potential/res (thermo only,no cutoff) | 0.866 | ----- |

ProsaII combined score | 0.554 | 0.693 |

Delaunay Simplex Geometry
| ||

median circumsphere radius(no cutoff) | 0.701 | 0.639 |

mean tetrahedrality (no cutoff) | 0.598 | 0.574 |

number simplices/residue (10Å cutoff) | 0.528 | 0.557 |

number simplices/residue (no cutoff) | 0.567 | 0.697 |

Volume/Surface Area/Compactness
| ||

Naccess solvent accessible area | 0.567 | 0.598 |

Delaunay surface area (no cutoff) | 0.606 | 0.669 |

van der Waals area | 0.559 | 0.549 |

Delaunay volume (no cutoff) | 0.598 | 0.701 |

Van der Waals volume | 0.528 | 0.598 |

Delaunay area/volume (10Å cutoff) | 0.583 | 0.549 |

Delaunay area/volume (no cutoff) | 0.669 | 0.803 |

van der Waals area/volume | 0.512 | 0.557 |

packing density | 0.543 | 0.549 |

van der Waals volume/Delaunay volume | 0.685 | 0.779 |

Rigidity
| ||

mean B-factor | 0.661 | 0.533 |

Secondary Structure
| ||

secondary structure content (H+E 3 state DSSP) | 0.614 | 0.689 |

Sequence Length
| ||

number of residues | 0.528 | 0.672 |

Sequence Composition
| ||

total Kyte-Doolittle hydrophobicity | 0.575 | 0.549 |

sd Kyte-Doolittle hydrophobicity | 0.677 | 0.836 |

CvP bias | 0.803 | 0.918 |

(E+K)/(Q+H) | 0.591 | 0.861 |

IVYWREL | 0.827 | 0.926 |