Table 3 Numerical results of using RUGB and GB methods in protein structure determination
From: Protein structure determination via an efficient geometric build-up algorithm
PDB Name | Atoms | RUGB error* | GB error1** | GB error2* |
|---|---|---|---|---|
2DX2 | 174 | 2.31E-11 | 7.81E-12 | 4.80E-05 |
1ID7 | 189 | 8.62E-14 | 1.94E-13 | 8.48E-08 |
1B5N | 332 | 1.93E-10 | 1.87E-07 | 4.31E+07 |
1FW5 | 332 | 1.65E-12 | 2.31E-08 | 1.55E+00 |
1SOL | 353 | 7.33E-13 | 1.58E-05 | 1.70E+04 |
1JAV | 360 | 2.78E-12 | 3.33E-03 | 4.97E+01 |
1MEQ | 405 | 2.43E-12 | 4.54E-08 | 2.21E+04 |
1AMB | 438 | 7.11E-12 | 3.01E-09 | 1.11E+00 |
1R7C | 532 | 8.62E-10 | 1.54E-2 | 6.07E+12 |
1HLL | 540 | 2.83E-12 | 2.04 | 1.83E+09 |
1VII | 596 | 3.56E-10 | 0.373 | 1.52E+05 |
1HIP | 617 | 4.80E-10 | 1.25E+5 | N.A. |
1ULR | 677 | 3.84E-10 | 3.20E+3 | 7.33E+09 |
1BOM | 700 | 1.36E-09 | 2.7E-2 | 1.68E+12 |
1AIK | 729 | 9.19E-09 | 26.9 | N.A. |
1CEU | 854 | 3.15E-10 | 5E-5 | 9.35E+09 |
1KVX' | 954 | 7.21E-04 | 977.49 | 7.45E+30 |
1VMP | 1166 | 1.01E-06 | 2.78071E+13 | N.A. |
1HSM | 1251 | 5.88E-07 | 1857.809626 | 1.37E+15 |
1HAA | 1310 | 4.49E-10 | 83.15 | 6.62E+09 |