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Table 4 Mean and standard deviation values (given in parentheses, reported only for datasets with size ≥ 5) for twist, for the ten dinucleotide steps, i ncorporating Watson-Crick basepairs

From: An ensemble of B-DNA dinucleotide geometries lead to characteristic nucleosomal DNA structure and provide plasticity required for gene expression

 

Twist values for dinucleotide steps with

 

Minor groove facing the histone octamer

Backbone facing the histone octamer

Major groove facing the histone octamer

Step

(Region I)

(Region II)

(Region III)

 

BI/BI

BI/BII

BII/BII

BI/BI

BI/BII

BII/BII

BI/BI

BI/BII

BII/BII

AA/TT

34.3

(3.7)

38.7

(3.8)

41.2

(3.2)

34.5

(3.9)

37.7

(6.3)

41.9

NA

32.4

(2.7)

33.7

(3.5)

35.2

NA

 

241

67

8

122

21

1

289

55

1

AG/CT

33.6

(2.7)

37.9

(3.4)

41.0

(3.7)

36.3

(2.1)

33.7

NA

NA

30.5

(3.7)

32.1

(3.7)

NA

 

104

119

47

29

2

0

139

38

0

GA/TC

37.5

(2.2)

38.4

(2.4)

42.1

NA

32.4

(3.5)

36.9

(3.0)

39.1

NA

33.7

(3.7)

35.6

(2.5)

37.1

NA

 

82

117

2

73

31

3

153

54

2

GG/CC

29.5

(4.3)

36.1

(4.6)

44.1

(2.9)

29.2

(3.5)

32.1

(3.0)

29.5

NA

32.7

(3.3)

35.5

(2.5)

NA

 

71

150

28

42

16

1

75

13

0

AC/GT

30.8

NA

39.1

NA

NA

32.1

(2.6)

38.0

NA

NA

31.8

(2.7)

35.2

(4.2)

NA

 

1

4

0

59

1

0

271

20

0

AT/AT

34.6

(2.9)

37.6

(2.9)

NA

32.4

(3.4)

36.4

NA

NA

33.1

(3.6)

35.8

(3.2)

NA

 

109

5

0

110

4

0

139

6

0

GC/GC

34.2

(3.7)

38.7

(2.7)

41.6

(2.3)

26.9

(3.1)

36.5

(2.3)

NA

26.6

(2.2)

30.3

NA

NA

 

32

102

12

29

28

0

26

1

0

CA/TG

33.9

(2.5)

38.8

(4.9)

45.8

(3.2)

34.1

(3.0)

35.8

(4.6)

45.0

(3.5)

31.1

(3.9)

35.1

(5.3)

47.7

(3.7)

 

54

65

120

72

82

54

158

99

51

CG/CG

37.4

NA

38.2

(2.0)

38.6

(4.1)

NA

NA

NA

38.6

NA

38.6

NA

NA

 

3

35

10

0

0

0

1

1

0

TA/TA

35.7

(2.5)

40.5

NA

51.4

NA

38.1

(3.1)

41.1

(2.2)

44.8

NA

31.2

(3.6)

31.3

(3.0)

33.7

NA

 

33

2

1

15

16

1

82

29

1

Overall

34.2

(3.8)

37.9

(3.8)

43.9

(4.0)

32.9

(4.0)

36.4

(4.5)

44.4

(4.1)

32.0

(3.5)

34.3

(4.3)

46.9

(4.8)

 

730

666

228

551

201

60

1333

316

55

  1. The specifications are as described in the legend for table 3.