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Table 2 Comparison of the global structure of C. immitis RpiB with RpiB enzymes from other organisms

From: Structural characterization of a ribose-5-phosphate isomerase B from the pathogenic fungus Coccidioides immitis

Organism Reference PDB Similar Cα atoms R.m.s.d. (Å) Identity (%)
Bacteria     
Clostridium thermocellum 3HEE [14] 148 1.17 34
Escherichia coli 1NN4 [2] 143 1.10 38
Mycobacterium tuberculosis 2VVO [5, 22] 141 1.18 26
Novosphingobium aromaticivorans 3C5Y 149 1.97 <20
Streptococcus pneumoniae 2PPW 146 1.91 <20
Thermotoga maratima 1O1X [19] 143 1.24 33
Vibrio parahaemolyticus 3ONO 149 1.86 <20
Eukaryotes     
Giardia lamblia 3S5P 125 1.06 28
Trypanosoma cruzi 3K8C [6] 148 1.40 29
  1. Superposition calculations were done in CCP4 using the program Superposition and the secondary structure matching setting. The number of similar Cα atoms (residues) is reported. For PDB entries 3C5Y (JCSG), 2PPW (Wu, R. et al.), 3ONO (Kim, Y. et al.) and 3S5P (Edwards, T.E. et al.) no primary citation has been reported.