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Table 2 Comparison of the global structure of C. immitis RpiB with RpiB enzymes from other organisms

From: Structural characterization of a ribose-5-phosphate isomerase B from the pathogenic fungus Coccidioides immitis

Organism

Reference PDB

Similar Cα atoms

R.m.s.d. (Ã…)

Identity (%)

Bacteria

    

Clostridium thermocellum

3HEE [14]

148

1.17

34

Escherichia coli

1NN4 [2]

143

1.10

38

Mycobacterium tuberculosis

2VVO [5, 22]

141

1.18

26

Novosphingobium aromaticivorans

3C5Y

149

1.97

<20

Streptococcus pneumoniae

2PPW

146

1.91

<20

Thermotoga maratima

1O1X [19]

143

1.24

33

Vibrio parahaemolyticus

3ONO

149

1.86

<20

Eukaryotes

    

Giardia lamblia

3S5P

125

1.06

28

Trypanosoma cruzi

3K8C [6]

148

1.40

29

  1. Superposition calculations were done in CCP4 using the program Superposition and the secondary structure matching setting. The number of similar Cα atoms (residues) is reported. For PDB entries 3C5Y (JCSG), 2PPW (Wu, R. et al.), 3ONO (Kim, Y. et al.) and 3S5P (Edwards, T.E. et al.) no primary citation has been reported.