TY - JOUR AU - De Simone, A. AU - Dodson, G. G. AU - Verma, C. S. AU - Zagari, A. AU - Fraternali, F. PY - 2005 DA - 2005// TI - Prion and water: tight and dynamical hydration sites have a key role in structural stability JO - Proceedings of the National Academy of Sciences of the United States of America VL - 102 UR - https://doi.org/10.1073/pnas.0501748102 DO - 10.1073/pnas.0501748102 ID - De Simone2005 ER - TY - JOUR AU - Qiu, W. AU - Wang, L. AU - Lu, W. AU - Boechler, A. AU - Sanders, D. A. AU - Zhong, D. PY - 2007 DA - 2007// TI - Dissection of complex protein dynamics in human thioredoxin JO - Proceedings of the National Academy of Sciences of the United States of America VL - 104 UR - https://doi.org/10.1073/pnas.0608498104 DO - 10.1073/pnas.0608498104 ID - Qiu2007 ER - TY - JOUR AU - Ahmad, M. AU - Gu, W. AU - Geyer, T. AU - Helms, V. PY - 2011 DA - 2011// TI - Adhesive water networks facilitate binding of protein interfaces JO - Nat Commun VL - 2 UR - https://doi.org/10.1038/ncomms1258 DO - 10.1038/ncomms1258 ID - Ahmad2011 ER - TY - JOUR AU - Lounnas, V. AU - Pettitt, B. M. PY - 1994 DA - 1994// TI - A connected-cluster of hydration around myoglobin: correlation between molecular dynamics simulations and experiment JO - Proteins VL - 18 UR - https://doi.org/10.1002/prot.340180206 DO - 10.1002/prot.340180206 ID - Lounnas1994 ER - TY - JOUR AU - Levitt, M. AU - Park, B. H. PY - 1993 DA - 1993// TI - Water: now you see it, now you don't JO - Structure VL - 1 UR - https://doi.org/10.1016/0969-2126(93)90011-5 DO - 10.1016/0969-2126(93)90011-5 ID - Levitt1993 ER - TY - JOUR AU - Mattos, C. AU - Bellamacina, C. R. AU - Peisach, E. AU - Pereira, A. AU - Vitkup, D. AU - Petsko, G. A. AU - Ringe, D. PY - 2006 DA - 2006// TI - Multiple solvent crystal structures: probing binding sites, plasticity and hydration JO - Journal of molecular biology VL - 357 UR - https://doi.org/10.1016/j.jmb.2006.01.039 DO - 10.1016/j.jmb.2006.01.039 ID - Mattos2006 ER - TY - JOUR AU - Halle, B. AU - Denisov, V. P. PY - 2001 DA - 2001// TI - Magnetic relaxation dispersion studies of biomolecular solutions JO - Methods in enzymology VL - 338 UR - https://doi.org/10.1016/S0076-6879(02)38220-X DO - 10.1016/S0076-6879(02)38220-X ID - Halle2001 ER - TY - JOUR AU - Halle, B. AU - Modig, K. AU - Liepinsh, E. AU - Otting, G. PY - 2004 DA - 2004// TI - Dynamics of protein and peptide hydration JO - J Am Chem Soc VL - 126 UR - https://doi.org/10.1021/ja038325d DO - 10.1021/ja038325d ID - Halle2004 ER - TY - JOUR AU - Otting, G. PY - 1997 DA - 1997// TI - NMR studies of water bound to biological molecules JO - Progress in Nuclear Magnetic Resonance Spectroscopy VL - 31 UR - https://doi.org/10.1016/S0079-6565(97)00012-5 DO - 10.1016/S0079-6565(97)00012-5 ID - Otting1997 ER - TY - JOUR AU - Dalvit, C. PY - 1996 DA - 1996// TI - Homonuclear 1D and 2D NMR Experiments for the Observation of Solvent-Solute Interactions JO - Journal of Magnetic Resonance, Series B VL - 112 UR - https://doi.org/10.1006/jmrb.1996.0143 DO - 10.1006/jmrb.1996.0143 ID - Dalvit1996 ER - TY - JOUR AU - Liepinsh, E. AU - Otting, G. PY - 1999 DA - 1999// TI - Water-protein NOEs: Optimized scheme for selective water excitation JO - J Biomol Nmr VL - 13 UR - https://doi.org/10.1023/A:1008375214604 DO - 10.1023/A:1008375214604 ID - Liepinsh1999 ER - TY - JOUR AU - Huang, H. AU - Melacini, G. PY - 2006 DA - 2006// TI - High-resolution protein hydration NMR experiments: probing how protein surfaces interact with water and other non-covalent ligands JO - Anal Chim Acta VL - 564 UR - https://doi.org/10.1016/j.aca.2005.10.049 DO - 10.1016/j.aca.2005.10.049 ID - Huang2006 ER - TY - JOUR AU - Otting, G. AU - Liepinsh, E. AU - Wuthrich, K. PY - 1991 DA - 1991// TI - Protein hydration in aqueous solution JO - Science (New York, NY VL - 254 UR - https://doi.org/10.1126/science.1948083 DO - 10.1126/science.1948083 ID - Otting1991 ER - TY - JOUR AU - Kuhn, L. A. AU - Swanson, C. A. AU - Pique, M. E. AU - Tainer, J. A. AU - Getzoff, E. D. PY - 1995 DA - 1995// TI - Atomic and residue hydrophilicity in the context of folded protein structures JO - Proteins-Structure Function and Genetics VL - 23 UR - https://doi.org/10.1002/prot.340230408 DO - 10.1002/prot.340230408 ID - Kuhn1995 ER - TY - JOUR AU - Niccolai, N. AU - Spiga, O. AU - Bernini, A. AU - Scarselli, M. AU - Ciutti, A. AU - Fiaschi, I. AU - Chiellini, S. AU - Molinari, H. AU - Temussi, P. A. PY - 2003 DA - 2003// TI - NMR studies of protein hydration and TEMPOL accessibility JO - Journal of molecular biology VL - 332 UR - https://doi.org/10.1016/S0022-2836(03)00852-0 DO - 10.1016/S0022-2836(03)00852-0 ID - Niccolai2003 ER - TY - JOUR AU - Venditti, V. AU - Bernini, A. AU - De Simone, A. AU - Spiga, O. AU - Prischi, F. AU - Niccolai, N. PY - 2007 DA - 2007// TI - MD and NMR studies of alpha-bungarotoxin surface accessibility JO - Biochem Bioph Res Co VL - 356 UR - https://doi.org/10.1016/j.bbrc.2007.02.094 DO - 10.1016/j.bbrc.2007.02.094 ID - Venditti2007 ER - TY - JOUR AU - Niccolai, N. AU - Ciutti, A. AU - Spiga, O. AU - Scarselli, M. AU - Bernini, A. AU - Bracci, L. AU - Di Maro, D. AU - Dalvit, C. AU - Molinari, H. AU - Esposito, G. PY - 2001 DA - 2001// TI - NMR studies of protein surface accessibility JO - The Journal of biological chemistry VL - 276 UR - https://doi.org/10.1074/jbc.M107387200 DO - 10.1074/jbc.M107387200 ID - Niccolai2001 ER - TY - JOUR AU - Bernini, A. AU - Venditti, V. AU - Spiga, O. AU - Niccolai, N. PY - 2009 DA - 2009// TI - Probing protein surface accessibility with solvent and paramagnetic molecules JO - Progress in Nuclear Magnetic Resonance Spectroscopy VL - 54 UR - https://doi.org/10.1016/j.pnmrs.2008.10.003 DO - 10.1016/j.pnmrs.2008.10.003 ID - Bernini2009 ER - TY - JOUR AU - De Simone, A. AU - Spadaccini, R. AU - Temussi, P. A. AU - Fraternali, F. PY - 2006 DA - 2006// TI - Toward the understanding of MNEI sweetness from hydration map surfaces JO - Biophys J VL - 90 UR - https://doi.org/10.1529/biophysj.105.073171 DO - 10.1529/biophysj.105.073171 ID - De Simone2006 ER - TY - JOUR AU - Renzone, G. AU - Vitale, R. M. AU - Scaloni, A. AU - Rossi, M. AU - Amodeo, P. AU - Guagliardi, A. PY - 2007 DA - 2007// TI - Structural characterization of the functional regions in the archaeal protein Sso7d JO - Proteins VL - 67 UR - https://doi.org/10.1002/prot.21220 DO - 10.1002/prot.21220 ID - Renzone2007 ER - TY - JOUR AU - Consonni, R. AU - Arosio, I. AU - Recca, T. AU - Fusi, P. AU - Zetta, L. PY - 2007 DA - 2007// TI - Structural determinants responsible for the thermostability of Sso7d and its single point mutants JO - Proteins VL - 67 UR - https://doi.org/10.1002/prot.21256 DO - 10.1002/prot.21256 ID - Consonni2007 ER - TY - JOUR AU - Guagliardi, A. AU - Mancusi, L. AU - Rossi, M. PY - 2004 DA - 2004// TI - Reversion of protein aggregation mediated by Sso7d in cell extracts of Sulfolobus solfataricus JO - The Biochemical journal VL - 381 UR - https://doi.org/10.1042/BJ20040131 DO - 10.1042/BJ20040131 ID - Guagliardi2004 ER - TY - JOUR AU - Guagliardi, A. AU - Cerchia, L. AU - Rossi, M. PY - 2002 DA - 2002// TI - The Sso7d protein of Sulfolobus solfataricus: in vitro relationship among different activities JO - Archaea (Vancouver, BC VL - 1 UR - https://doi.org/10.1155/2002/313147 DO - 10.1155/2002/313147 ID - Guagliardi2002 ER - TY - JOUR AU - Bernini, A. AU - Venditti, V. AU - Spiga, O. AU - Ciutti, A. AU - Prischi, F. AU - Consonni, R. AU - Zetta, L. AU - Arosio, I. AU - Fusi, P. AU - Guagliardi, A. PY - 2008 DA - 2008// TI - NMR studies on the surface accessibility of the archaeal protein Sso7d by using TEMPOL and Gd(III)(DTPA-BMA) as paramagnetic probes JO - Biophys Chem VL - 137 UR - https://doi.org/10.1016/j.bpc.2008.07.003 DO - 10.1016/j.bpc.2008.07.003 ID - Bernini2008 ER - TY - JOUR AU - Su, S. AU - Gao, Y. G. AU - Robinson, H. AU - Liaw, Y. C. AU - Edmondson, S. P. AU - Shriver, J. W. AU - Wang, A. H. PY - 2000 DA - 2000// TI - Crystal structures of the chromosomal proteins Sso7d/Sac7d bound to DNA containing T-G mismatched base-pairs JO - J Mol Biol VL - 303 UR - https://doi.org/10.1006/jmbi.2000.4112 DO - 10.1006/jmbi.2000.4112 ID - Su2000 ER - TY - JOUR AU - Gao, Y. G. AU - Su, S. Y. AU - Robinson, H. AU - Padmanabhan, S. AU - Lim, L. AU - McCrary, B. S. AU - Edmondson, S. P. AU - Shriver, J. W. AU - Wang, A. H. PY - 1998 DA - 1998// TI - The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA JO - Nat Struct Biol VL - 5 UR - https://doi.org/10.1038/1822 DO - 10.1038/1822 ID - Gao1998 ER - TY - JOUR AU - Baumann, H. AU - Knapp, S. AU - Lundback, T. AU - Ladenstein, R. AU - Hard, T. PY - 1994 DA - 1994// TI - Solution Structure and DNA-Binding Properties of a Thermostable Protein from the Archaeon Sulfolobus-Solfataricus JO - Nature Structural Biology VL - 1 UR - https://doi.org/10.1038/nsb1194-808 DO - 10.1038/nsb1194-808 ID - Baumann1994 ER - TY - JOUR AU - Consonni, R. AU - Santomo, L. AU - Fusi, P. AU - Tortora, P. AU - Zetta, L. PY - 1999 DA - 1999// TI - A single-point mutation in the extreme heat- and pressure-resistant sso7d protein from sulfolobus solfataricus leads to a major rearrangement of the hydrophobic core JO - Biochemistry VL - 38 UR - https://doi.org/10.1021/bi9911280 DO - 10.1021/bi9911280 ID - Consonni1999 ER - TY - JOUR AU - Bernstein, F. C. AU - Koetzle, T. F. AU - Williams, G. J. AU - Meyer, E. F. AU - Brice, M. D. AU - Rodgers, J. R. AU - Kennard, O. AU - Shimanouchi, T. AU - Tasumi, M. PY - 1977 DA - 1977// TI - The Protein Data Bank: a computer-based archival file for macromolecular structures JO - J Mol Biol VL - 112 UR - https://doi.org/10.1016/S0022-2836(77)80200-3 DO - 10.1016/S0022-2836(77)80200-3 ID - Bernstein1977 ER - TY - JOUR AU - Melacini, G. AU - Kaptein, R. AU - Boelens, R. PY - 1999 DA - 1999// TI - Editing of chemical exchange-relayed NOEs in NMR experiments for the observation of protein-water interactions JO - J Magn Reson VL - 136 UR - https://doi.org/10.1006/jmre.1998.1646 DO - 10.1006/jmre.1998.1646 ID - Melacini1999 ER - TY - JOUR AU - Knight, J. D. R. AU - Hamelberg, D. AU - McCammon, J. A. AU - Kothary, R. PY - 2009 DA - 2009// TI - The role of conserved water molecules in the catalytic domain of protein kinases JO - Proteins-Structure Function and Bioinformatics VL - 76 UR - https://doi.org/10.1002/prot.22451 DO - 10.1002/prot.22451 ID - Knight2009 ER - TY - JOUR AU - Berendsen, H. J. C. AU - van der Spoel, D. AU - van Drunen, R. PY - 1995 DA - 1995// TI - GROMACS: A message-passing parallel molecular dynamics implementation JO - Comp Phys Comm VL - 91 UR - https://doi.org/10.1016/0010-4655(95)00042-E DO - 10.1016/0010-4655(95)00042-E ID - Berendsen1995 ER - TY - CHAP AU - Van Gunsteren, W. F. AU - Billeter, S. AU - Eising, A. AU - Hunenberger, P. H. AU - Kruger, P. AU - Mark, A. E. AU - Scott, W. R. P. AU - Tironi, I. G. PY - 1996 DA - 1996// TI - Biomolecular Simulation: GROMOS96 Manual and User Guide BT - BIOMOS bv, Zurich, Groningen ID - Van Gunsteren1996 ER - TY - STD TI - Berendsen HJC, Grigerra JR, Straatsma TP: The missing term in effective pair potentials.Journal of Physical Chemistry 1987., 91(6269–71): ID - ref34 ER - TY - JOUR AU - Darden, T. AU - Perera, L. AU - Li, L. AU - Pedersen, L. PY - 1999 DA - 1999// TI - New tricks for modellers from the crystallography toolkit: the particle mesh Ewald algorithm and its use in nucleic acid simulations JO - Struct Fold Des VL - 7 UR - https://doi.org/10.1016/S0969-2126(99)80033-1 DO - 10.1016/S0969-2126(99)80033-1 ID - Darden1999 ER - TY - JOUR AU - Kleywegt, G. J. AU - Jones, T. A. PY - 1996 DA - 1996// TI - xdlMAPMAN and xdlDATAMAN - Programs for reformatting, analysis and manipulation of biomacromolecular electron-density maps and reflection data sets JO - Acta Crystallogr D VL - 52 UR - https://doi.org/10.1107/S0907444995014983 DO - 10.1107/S0907444995014983 ID - Kleywegt1996 ER - TY - JOUR AU - Fusi, P. AU - Grisa, M. AU - Mombelli, E. AU - Consonni, R. AU - Tortora, P. AU - Vanoni, M. PY - 1995 DA - 1995// TI - Expression of a synthetic gene encoding P2 ribonuclease from the extreme thermoacidophilic archaebacterium Sulfolobus solfataricus in mesophylic hosts JO - Gene VL - 154 UR - https://doi.org/10.1016/0378-1119(94)00828-G DO - 10.1016/0378-1119(94)00828-G ID - Fusi1995 ER - TY - STD TI - Goddard TD, Kneller DG: SPARKY 3. University of California, San Francisco; ID - ref38 ER - TY - JOUR AU - Hwang, T. AU - Shaka, A. J. PY - 1995 DA - 1995// TI - Water suppression that works. Excitation sculpting using arbitrary waveforms and pulsed field gradients JO - Journal of Magnetic Resonance, Series A VL - 112 UR - https://doi.org/10.1006/jmra.1995.1047 DO - 10.1006/jmra.1995.1047 ID - Hwang1995 ER -