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Table 2 TrmI molecular volumes and cavity volumes.

From: Structural comparison of tRNA m1A58 methyltransferases revealed different molecular strategies to maintain their oligomeric architecture under extreme conditions

Organism

Cavity volumesa

Compactness

Protein Volume (A3)

 

Total cavity volumes (A 3 )

number of cavities

Surface area (Ă… 2 )

Surface/Volume ratio (Ă… -1 )

Monomer a

Dimer b A/B

Tetramer c

Δ 2 = b - 2a

Δ 4 = c - 4a

M. tuberculosis

1 501

2

41130

0.39

26 460

52 970

105 900

+ 50

+ 60

T. thermophilus

1 182

2

39120

0.38

25 870

51 700

103 100

-40

- 380

T. maritima

2 154

3

41210

0.37

27 930

55 860

111 700

0

- 20

A. aeolicus

1 697

3

38680

0.36

27 000

53 955

107 900

- 45

- 100

P. abyssi

         

3MB5

2 036

3

41880

0.38

27 420

54 820

109 600

-20

- 80

3LGA

    

27 330

54 635

109 200

-30

- 130

3LHD

    

26 440

52 840

105 700

-45

- 70

  1. a calculated for TrmI monomers without ligands