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Table 1 Crystal data and refinement statistics of the three Oxy:Fd complex structures

From: Structural insight into the substrate- and dioxygen-binding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9a-dioxygenase

 

Reduced CAR-bound binary complex

Oxygen-bound binary complex

CAR- and oxygen-bound binary complex

(Oxy: Fdred-CAR)

(Oxy: FdO2)

(Oxy: FdCAR-O2)

Crystal Data

   

Space group

P 21

P 21

P 21

Unit cell parameters (Å, °)

a = 98.2, b = 89.8,

a = 98.2, b = 89.4,

a = 98.0, b = 89.6,

 

c = 105.2,

c = 105.0,

c = 104.8,

 

β = 104.4

β = 104.1

β = 104.2

Completeness (%)a

99.9 (99.9)

99.9 (99.4)

99.3 (97.6)

Rmergeb (%)a

8.1 (33.8)

6.0 (36.3)

6.3 (31.2)

Resolution range (Ã…)a

50.0-1.95 (2.02-1.95)

50.0-1.85 (1.92-1.85)

50.0-2.00 (2.07-2.00)

Total no. of reflections

684,339

841,651

422,706

No. of unique reflections

128,789 (12,781)

150,169 (14,838)

117,108 (11,459)

Refinement

   

Resolution range (Ã…)a

40.6-1.95 (2.02-1.95)

47.6-1.85 (1.92-1.85)

32.7-2.00 (2.07-2.00)

R-factor (%)c

19.8

19.6

20.5

Rfree (%)d

21.9

22.5

24.0

Root mean square deviation (RMSD)

   

 Bond length (Å)

0.005

0.005

0.006

 Bond angles (°)

1.3

1.3

1.3

Model composition and average B factor (Ã…2)

   

 All

2521, 29.2

2716, 32.0

2337, 40.6

 Residues

1482, 28.6

1483, 31.1

1481, 40.2

 Water

1037, 36.3

1230, 40.4

851, 45.6

 CAR

2, 28.8

–, –

2, 48.2

 Dioxygen

–, –

3, 36.4

3, 50.9

Ramachandran plote

   

Favored region (%)

96.4

95.9

95.4

Allowed region (%)

3.4

3.9

4.4

Outlier region (%)

0.2

0.2

0.3

  1. a Values in parentheses are for the outermost shell.
  2. bRmerge = Σ h Σ l |I h l - < I h  > |/Σ h Σ l  < I h >, where I l is the l th observation of reflection h and < I h  > is the weighted average intensity for all observations l of reflection h.
  3. cR-factor is defined as R = Σ||Fobs| - |Fcalc||/Σ|Fobs|.
  4. dRfree was calculated using 5% of the unique reflections.
  5. e Ramachandran plot was analyzed with RAMPAGE [40].