Table 1 Active and passive AIRs chosen for the docking experiments

Baseline (BL)

Rpn13

S55, L56, L73, I74,

auto

F76, P77, D78, D79,

K99, A100, G101

ubiquitin

K6, L8, I44, F45,

auto

A46, G47, K48, Q49,

H68, V70, R72

LP/MS filter (Ubiquitin CPORT)

Rpn13

D41, K42, D53, D54,

auto

E70, D79, E81, K99

ubiquitin

-

F4, K6-K11, P19, Q31,

E34-Q40, R42, I44-Q49, R54,

T55, S57-N60, Q62-T66, H68,

V70, L71-G76

LP/MS (Ubiquitin CPORT)

Rpn13

D53, D54, S55, D78,

auto

D79, F98, K99

ubiquitin

-

F4, K6-K11, P19, Q31,

E34-Q40, R42, I44-Q49, R54,

T55, S57-N60, Q62-T66, H68,

V70, L71-G76

chemical shift perturbations

Rpn13

S55, F76, D78, K99,

auto

G101, R104

ubiquitin

L8, F45, A46, G47,

auto

K48, Q49, H68, V70

CPORT

Rpn13

Y22-E25, R27, M31,

auto

T36-P40, Q50-L56, H58,

V69, D71-I74,

F76, P77, D79, V85, C88-S90,

V93, V95, K103, L105, F106,

W108, E126, C127, N129, N130

ubiquitin

F4, K6-K11, P19, Q31,

auto

E34-Q40, R42, I44-Q49, R54,

T55, S57-N60, Q62-T66, H68,

V70, L71-G76