Table 3 Secondary structure prediction from the sequence and secondary structure calculation from the built structure of the T. gondii 12 kDa ES protein
1 | 6 | 11 | 16 | 21 | 26 | 31 | 36 | 41 | 46 | 51 | 56 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sequence | MPVHH | VTTEA | QFKSL | IEENE | MVLVD | FYAVW | CGPCR | QVAPL | VEAMS | EKPEY | AKVKF | VKIDV |
Jpred | --BBB | B--AA | AAAAA | AAA-- | -BBBB | BB--- | ---AA | AAAAA | AAAAA | AAA-- | ---BB | BBBB- |
PORTER | ---BB | B--AA | AAAAA | AA--- | BBBBB | BB--- | -AAAA | AAAAA | AAAAA | AA--- | ---BB | BBBB- |
Prof | --BBB | BB--- | AAAAA | AA--- | BBBBB | BB--- | ---AA | AAAAA | AAAAA | AA--- | --BBB | BBBBB |
APSSP2 | --BB- | -AAAA | AAAAA | A--BB | BBBBB | ----- | -AAAA | AAAAA | AAAAA | A---- | BBBBB | BB--- |
STRIDE | ---BB | ---AA | AAAAA | AA--- | BBBBB | BB--- | -AAAA | AAAAA | AAAAA | A---- | --BBB | BBBB- |
Built Model | ---BB | ---AA | AAAAA | AA--- | BBBBB | BB--- | -AAAA | AAAAA | AAAAA | A---- | --BBB | BBBB- |
61 | 66 | 71 | 76 | 81 | 86 | 91 | 96 | 101 | 106 | |||
Sequence | DELAD | VAERE | EINAM | PTFKL | FKQGK | AVDTV | VGANA | ERVEE | MVKKH | L | ||
Jpred | ----A | AAAAA | ----- | -BBBB | BB--- | BBBBB | ----A | AAAAA | AAAA- | - | ||
PORTER | ---AA | AAAA- | ----- | -BBBB | BB--B | BBBBB | B---A | AAAAA | AAAA- | - | ||
Prof | BBBBB | BBBBB | ----- | BBBBB | BB--- | BBBBB | ----A | AAAAA | AAAA- | - | ||
APSSP2 | -AAAA | AAA-- | BBBBB | BBBBB | -BBBB | BBB-- | --AAA | AAAAA | AA--- | - | ||
STRIDE | --AAA | AAAAA | ----- | -BBBB | BB--B | BBBBB | B---A | AAAAA | AAAAA | - | ||
Built Model | --AAA | AAAAA | ----- | -BBBB | BB--B | BBBBB | B---A | AAAAA | AAAAA | - |