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Table 2 SOM assignment of RDFs of oxidoreductases

From: Exploring functionally related enzymes using radially distributed properties of active sites around the reacting points of bound ligands

Node composition

EC

SCOP§

Catalytic residues

Occupied by one class

2,929 (156)

1,966 (77)

949 (67)

Conflict*

129 (27)

42 (9)

112 (15)

All RDFs

4,092 (241)

2,526 (100)

1,910 (231)

  1. The numbers indicate the RDF counts assigned to the nodes, and the number of classes is shown in parentheses. The SOM was performed by the RDF with an Epanechnikov neighborhood function in a [46, 28]-sized rectangular lattice
  2. *One class is more than 80% of the total. §The nodes were labeled using SCOP[44].
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BMC Structural Biology

ISSN: 1472-6807

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