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Table 7 Evaluation of the SOM distance with the RDFs for the prediction of enzyme function of transferases

From: Exploring functionally related enzymes using radially distributed properties of active sites around the reacting points of bound ligands

Dataset*

AUC

 

SOM distance

SiteEngine

Alignment

MAMMOTH

0.800

0.626

0.376

Needleman-Wunsch

0.790

0.678

0.474

  1. *The datasets were created by culling the pairs with greater than 15% pairwise identity. The SOM was run using an RDF with a cut-Gaussian neighborhood function in a [40, 19]-sized rectangular lattice.
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BMC Structural Biology

ISSN: 1472-6807

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