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Table 1 Sequence alignments in GPCR-ModSim indicate squid rhodopsin has the greatest identity to Tre1 + and Tre1 sctt

From: Molecular dynamics simulations on the Tre1 G protein-coupled receptor: exploring the role of the arginine of the NRY motif in Tre1 structure

Template

Tre1 +

Tre1 sctt

Total % identities

Total % identities

1U19 – bovine rhodopsin

14.3

14.1

2RH1 – human β 2 -adrenergic receptor

15.1

14.6

2VT4 – turkey β 1 -adrenergic receptor

14.8

14.3

2Z73 – squid rhodopsin *

17.4

16.7

3EML – human A2A-adenosine receptor

14.0

13.5

3ODU – human chemokine receptor 4

16.3

14.8

3PBL – human D3 dopamine receptor

16.1

15.9

  1. * Denotes the template chosen for homology modeling.