Table 1 List of structures of PLP-dependent type-I domains utilized for the calculation of the PLP_domain profile
PDB code a) | Enzyme description | Source | Resolution (Å) |
|---|---|---|---|
1. 1AX4 | Tryptophanase | Proteus vulgaris | 2.10 |
2. 1B9H | 3-amino-5-hydroxybenzoate synthase | Amycolatopsis mediterranei | 2.00 |
3. 1BJ4 | Serine hydroxymethyltransferase | Homo sapiens | 2.65 |
4. 1BJN | Phosphoserine aminotransferase | Escherichia coli | 2.29 |
5. 1BJW | Aspartate aminotransferase | Thermus thermophilus | 1.80 |
6. 1BS0 | 8-amino-7-oxononanoate synthase | Escherichia coli | 1.65 |
7. 1C7N | Cystalysin | Treponema denticola | 1.90 |
8. 1CL1 | Cystathionine beta-lyase | Escherichia coli | 1.83 |
9. 1D2F | MalY protein | Escherichia coli | 2.50 |
10. 1DGD | Dialkylglycine decarboxylase | Burkholderia cepacia | 2.80 |
11. 1DTY | Adenosylmethionine aminotransferase | Escherichia coli | 2.14 |
12. 1ECX | NifS-like protein | Thermotoga maritima | 2.70 |
13. 1ELQ | L-cysteine/L-cystine C-S lyase | Synechocystis sp. | 1.80 |
14. 1FG3 | Histidinol-phosphate aminotransferase | Escherichia coli | 2.20 |
15. 1H0C | Alanine-glyoxylate aminotransferase | Homo sapiens | 2.50 |
16. 1IAX | 1-aminocyclopropane-1-carboxylate synthase | Lycopersicon esculentum | 2.80 |
17. 1JS6 | Dopa decarboxylase | Sus scrofa | 2.60 |
18. 1LK9 | Alliin lyase | Allium sativum | 1.53 |
19. 1MDX | ArnB aminotransferase | Salmonella typhimurium | 1.96 |
20. 1OAT | Ornithine aminotransferase | Homo sapiens | 2.50 |
21. 1QGN | Cystathionine gamma-synthase | Nicotiana tabacum | 2.90 |
22. 1SF2 | 4-aminobutyrate-aminotransferase | Escherichia coli | 2.40 |
23. 1WKG | Acetylornithine aminotransferase | Thermus thermophilus HB8 | 2.25 |
24. 2BWP | 5-aminolevulinate synthase | Rhodobacter capsulatus | 2.70 |
25. 2FM1 | Threonine Aldolase | Thermotoga maritima | 2.25 |
26. 2GSA | Glutamate-1-semialdehyde 2,1-aminomutase | Synechococcus sp. | 2.40 |
27. 2JG2 | Serine Palmitoyltransferase | Pseudomonas paucimobilis | 1.30 |
28. 2NMP | Cystathionine gamma lyase | Homo sapiens | 2.60 |
29. 3BWO | L-tryptophan aminotransferase | Arabidopsis thaliana | 2.40 |
30. 3EI7 | LL-diaminopimelate aminotransferase | Arabidopsis thaliana | 1.99 |
31. 3FZ8 | Glutamate decarboxylase beta | Escherichia coli | 3.00 |