TY - JOUR AU - Casari, G. AU - Andrade, M. A. AU - Bork, P. AU - Boyle, J. AU - Daruvar, A. AU - Ouzounis, C. AU - Schneider, R. AU - Tamames, J. AU - Valencia, A. AU - Sander, C. PY - 1995 DA - 1995// TI - Challenging times for bioinformatics JO - Nature VL - 376 UR - https://doi.org/10.1038/376647a0 DO - 10.1038/376647a0 ID - Casari1995 ER - TY - JOUR AU - Blundell, T. L. AU - Mizuguchi, K. PY - 2000 DA - 2000// TI - Structural genomics: an overview JO - Prog Biophys Mol Biol VL - 73 UR - https://doi.org/10.1016/S0079-6107(00)00008-0 DO - 10.1016/S0079-6107(00)00008-0 ID - Blundell2000 ER - TY - JOUR AU - Watson, J. D. AU - Todd, A. E. AU - Bray, J. AU - Laskowski, R. A. AU - Edwards, A. AU - Joachimiak, A. AU - Orengo, C. A. AU - Thornton, J. M. PY - 2003 DA - 2003// TI - Target selection and determination of function in structural genomics JO - IUBMB Life VL - 55 UR - https://doi.org/10.1080/1521654031000123385 DO - 10.1080/1521654031000123385 ID - Watson2003 ER - TY - JOUR PY - 2008 DA - 2008// TI - The universal protein resource (UniProt) JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkn141 DO - 10.1093/nar/gkn141 ID - ref4 ER - TY - JOUR AU - Catoni, G. L. PY - 1953 DA - 1953// TI - S-Adenosylmethionine; a new intermediate formed enzymatically from L-methionine and adenosinetriphosphate JO - J Biol Chem VL - 204 ID - Catoni1953 ER - TY - JOUR AU - Cantoni, G. L. PY - 1975 DA - 1975// TI - Biological methylation: selected aspects JO - Annu Rev Biochem VL - 44 UR - https://doi.org/10.1146/annurev.bi.44.070175.002251 DO - 10.1146/annurev.bi.44.070175.002251 ID - Cantoni1975 ER - TY - JOUR AU - Kouzarides, T. PY - 2002 DA - 2002// TI - Histone methylation in transcriptional control JO - Curr Opin Genet Dev VL - 12 UR - https://doi.org/10.1016/S0959-437X(02)00287-3 DO - 10.1016/S0959-437X(02)00287-3 ID - Kouzarides2002 ER - TY - JOUR AU - Aravind, L. AU - Koonin, E. V. PY - 1999 DA - 1999// TI - Novel predicted RNA-binding domains associated with the translation machinery JO - J Mol Evol VL - 48 UR - https://doi.org/10.1007/PL00006472 DO - 10.1007/PL00006472 ID - Aravind1999 ER - TY - JOUR AU - Romano, J. D. AU - Michaelis, S. PY - 2001 DA - 2001// TI - Topological and mutational analysis of Saccharomyces cerevisiae Ste14p, founding member of the isoprenylcysteine carboxyl methyltransferase family JO - Mol Biol Cell VL - 12 UR - https://doi.org/10.1091/mbc.12.7.1957 DO - 10.1091/mbc.12.7.1957 ID - Romano2001 ER - TY - JOUR AU - Roje, S. PY - 2006 DA - 2006// TI - S-Adenosyl-L-methionine: beyond the universal methyl group donor JO - Phytochemistry VL - 67 UR - https://doi.org/10.1016/j.phytochem.2006.04.019 DO - 10.1016/j.phytochem.2006.04.019 ID - Roje2006 ER - TY - JOUR AU - Booker, S. J. AU - Cicchillo, R. M. AU - Grove, T. L. PY - 2007 DA - 2007// TI - Self-sacrifice in radical S-adenosylmethionine proteins JO - Curr Opin Chem Biol VL - 11 UR - https://doi.org/10.1016/j.cbpa.2007.08.028 DO - 10.1016/j.cbpa.2007.08.028 ID - Booker2007 ER - TY - JOUR AU - Layer, G. AU - Heinz, D. W. AU - Jahn, D. AU - Schubert, W. D. PY - 2004 DA - 2004// TI - Structure and function of radical SAM enzymes JO - Curr Opin Chem Biol VL - 8 UR - https://doi.org/10.1016/j.cbpa.2004.08.001 DO - 10.1016/j.cbpa.2004.08.001 ID - Layer2004 ER - TY - JOUR AU - Cadicamo, C. D. AU - Courtieu, J. AU - Deng, H. AU - Meddour, A. AU - O'Hagan, D. PY - 2004 DA - 2004// TI - Enzymatic fluorination in Streptomyces cattleya takes place with an inversion of configuration consistent with an SN2 reaction mechanism JO - Chem Bio Chem VL - 5 UR - https://doi.org/10.1002/cbic.200300839 DO - 10.1002/cbic.200300839 ID - Cadicamo2004 ER - TY - JOUR AU - Gilbert, S. D. AU - Montange, R. K. AU - Stoddard, C. D. AU - Batey, R. T. PY - 2006 DA - 2006// TI - Structural studies of the purine and SAM binding riboswitches JO - Cold Spring Harb Symp Quant Biol VL - 71 UR - https://doi.org/10.1101/sqb.2006.71.015 DO - 10.1101/sqb.2006.71.015 ID - Gilbert2006 ER - TY - JOUR AU - Montange, R. K. AU - Batey, R. T. PY - 2006 DA - 2006// TI - Structure of the S-adenosylmethionine riboswitch regulatory mRNA element JO - Nature VL - 441 UR - https://doi.org/10.1038/nature04819 DO - 10.1038/nature04819 ID - Montange2006 ER - TY - JOUR AU - Kozbial, P. Z. AU - Mushegian, A. R. PY - 2005 DA - 2005// TI - Natural history of S-adenosylmethionine-binding proteins JO - BMC Struct Biol VL - 5 UR - https://doi.org/10.1186/1472-6807-5-19 DO - 10.1186/1472-6807-5-19 ID - Kozbial2005 ER - TY - JOUR AU - Misako, K. AU - Kouichi, M. PY - 2004 DA - 2004// TI - Caffeine synthase and related methyltransferases in plants JO - Front Biosci VL - 9 UR - https://doi.org/10.2741/1364 DO - 10.2741/1364 ID - Misako2004 ER - TY - JOUR AU - Pradhan, S. AU - Esteve, P. O. PY - 2003 DA - 2003// TI - Mammalian DNA (cytosine-5) methyltransferases and their expression JO - Clin Immunol VL - 109 UR - https://doi.org/10.1016/S1521-6616(03)00204-3 DO - 10.1016/S1521-6616(03)00204-3 ID - Pradhan2003 ER - TY - JOUR AU - Chaib, H. AU - Prebet, T. AU - Vey, N. AU - Collette, Y. PY - 2011 DA - 2011// TI - Histone methyltransferases: a new class of therapeutic targets in cancer treatment? JO - Med Sci (Paris) VL - 27 UR - https://doi.org/10.1051/medsci/2011278014 DO - 10.1051/medsci/2011278014 ID - Chaib2011 ER - TY - JOUR AU - Wagner, J. M. AU - Hackanson, B. AU - Lubbert, M. AU - Jung, M. PY - 2010 DA - 2010// TI - Histone deacetylase (HDAC) inhibitors in recent clinical trials for cancer therapy JO - Clin Epigenetics VL - 1 UR - https://doi.org/10.1007/s13148-010-0012-4 DO - 10.1007/s13148-010-0012-4 ID - Wagner2010 ER - TY - JOUR AU - Borroni, B. AU - Agosti, C. AU - Archetti, S. AU - Costanzi, C. AU - Bonomi, S. AU - Ghianda, D. AU - Lenzi, G. L. AU - Caimi, L. AU - Di Luca, M. AU - Padovani, A. PY - 2004 DA - 2004// TI - Catechol-O-methyltransferase gene polymorphism is associated with risk of psychosis in Alzheimer Disease JO - Neurosci Lett VL - 370 UR - https://doi.org/10.1016/j.neulet.2004.08.006 DO - 10.1016/j.neulet.2004.08.006 ID - Borroni2004 ER - TY - JOUR AU - Item, C. B. AU - Mercimek-Mahmutoglu, S. AU - Battini, R. AU - Edlinger-Horvat, C. AU - Stromberger, C. AU - Bodamer, O. AU - Muhl, A. AU - Vilaseca, M. A. AU - Korall, H. AU - Stockler-Ipsiroglu, S. PY - 2004 DA - 2004// TI - Characterization of seven novel mutations in seven patients with GAMT deficiency JO - Hum Mutat VL - 23 UR - https://doi.org/10.1002/humu.9238 DO - 10.1002/humu.9238 ID - Item2004 ER - TY - JOUR AU - Bottiglieri, T. AU - Godfrey, P. AU - Flynn, T. AU - Carney, M. W. AU - Toone, B. K. AU - Reynolds, E. H. PY - 1990 DA - 1990// TI - Cerebrospinal fluid S-adenosylmethionine in depression and dementia: effects of treatment with parenteral and oral S-adenosylmethionine JO - J Neurol Neurosurg Psychiatry VL - 53 UR - https://doi.org/10.1136/jnnp.53.12.1096 DO - 10.1136/jnnp.53.12.1096 ID - Bottiglieri1990 ER - TY - JOUR AU - Rosenbaum, J. F. AU - Fava, M. AU - Falk, W. E. AU - Pollack, M. H. AU - Cohen, L. S. AU - Cohen, B. M. AU - Zubenko, G. S. PY - 1990 DA - 1990// TI - The antidepressant potential of oral S-adenosyl-l-methionine JO - Acta Psychiatr Scand VL - 81 UR - https://doi.org/10.1111/j.1600-0447.1990.tb05476.x DO - 10.1111/j.1600-0447.1990.tb05476.x ID - Rosenbaum1990 ER - TY - JOUR AU - Bottiglieri, T. PY - 1997 DA - 1997// TI - Ademetionine (S-adenosylmethionine) neuropharmacology: implications for drug therapies in psychiatric and neurological disorders JO - Expert Opin Investig Drugs VL - 6 UR - https://doi.org/10.1517/13543784.6.4.417 DO - 10.1517/13543784.6.4.417 ID - Bottiglieri1997 ER - TY - JOUR AU - Najm, W. I. AU - Reinsch, S. AU - Hoehler, F. AU - Tobis, J. S. AU - Harvey, P. W. PY - 2004 DA - 2004// TI - S-adenosyl methionine (SAMe) versus celecoxib for the treatment of osteoarthritis symptoms: a double-blind cross-over trial JO - BMC Musculoskelet Disord VL - 5 UR - https://doi.org/10.1186/1471-2474-5-6 DO - 10.1186/1471-2474-5-6 ID - Najm2004 ER - TY - JOUR AU - Zhu, B. T. PY - 2004 DA - 2004// TI - CNS dopamine oxidation and catechol-O-methyltransferase: importance in the etiology, pharmacotherapy, and dietary prevention of Parkinson's disease JO - Int J Mol Med VL - 13 ID - Zhu2004 ER - TY - JOUR AU - Berman, H. M. AU - Westbrook, J. AU - Feng, Z. AU - Gilliland, G. AU - Bhat, T. N. AU - Weissig, H. AU - Shindyalov, I. N. AU - Bourne, P. E. PY - 2000 DA - 2000// TI - The Protein Data Bank JO - Nucleic Acids Res VL - 28 UR - https://doi.org/10.1093/nar/28.1.235 DO - 10.1093/nar/28.1.235 ID - Berman2000 ER - TY - JOUR AU - Wu, C. H. AU - Nikolskaya, A. AU - Huang, H. AU - Yeh, L. S. AU - Natale, D. A. AU - Vinayaka, C. R. AU - Hu, Z. Z. AU - Mazumder, R. AU - Kumar, S. AU - Kourtesis, P. PY - 2004 DA - 2004// TI - PIRSF: family classification system at the Protein Information Resource JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh097 DO - 10.1093/nar/gkh097 ID - Wu2004 ER - TY - JOUR AU - Vasudevan, S. AU - Vinayaka, C. R. AU - Natale, D. A. AU - Huang, H. AU - Kahsay, R. Y. AU - Wu, C. H. PY - 2011 DA - 2011// TI - Structure-guided rule-based annotation of protein functional sites in UniProt knowledgebase JO - Methods Mol Biol VL - 694 UR - https://doi.org/10.1007/978-1-60761-977-2_7 DO - 10.1007/978-1-60761-977-2_7 ID - Vasudevan2011 ER - TY - JOUR AU - Laskowski, R. A. PY - 2001 DA - 2001// TI - PDBsum: summaries and analyses of PDB structures JO - Nucleic Acids Res VL - 29 UR - https://doi.org/10.1093/nar/29.1.221 DO - 10.1093/nar/29.1.221 ID - Laskowski2001 ER - TY - JOUR AU - Eddy, S. R. PY - 1996 DA - 1996// TI - Hidden Markov models JO - Curr Opin Struct Biol VL - 6 UR - https://doi.org/10.1016/S0959-440X(96)80056-X DO - 10.1016/S0959-440X(96)80056-X ID - Eddy1996 ER - TY - JOUR AU - Wang, Y. AU - Geer, L. Y. AU - Chappey, C. AU - Kans, J. A. AU - Bryant, S. H. PY - 2000 DA - 2000// TI - Cn3D: sequence and structure views for Entrez JO - Trends Biochem Sci VL - 25 UR - https://doi.org/10.1016/S0968-0004(00)01561-9 DO - 10.1016/S0968-0004(00)01561-9 ID - Wang2000 ER - TY - JOUR AU - Andreeva, A. AU - Howorth, D. AU - Brenner, S. E. AU - Hubbard, T. J. AU - Chothia, C. AU - Murzin, A. G. PY - 2004 DA - 2004// TI - SCOP database in 2004: refinements integrate structure and sequence family data JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh039 DO - 10.1093/nar/gkh039 ID - Andreeva2004 ER - TY - JOUR AU - Gough, J. AU - Chothia C:, S. U. P. E. R. F. A. M. I. L. Y. PY - 2002 DA - 2002// TI - HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/30.1.268 DO - 10.1093/nar/30.1.268 ID - Gough2002 ER - TY - JOUR AU - Sun, G. AU - Voigt, J. H. AU - Marquez, V. E. AU - Nicklaus, M. C. PY - 2005 DA - 2005// TI - Prosit, an online service to calculate pseudorotational parameters of nucleosides and nucleotides JO - Nucleosides Nucleotides Nucleic Acids VL - 24 UR - https://doi.org/10.1081/NCN-200059757 DO - 10.1081/NCN-200059757 ID - Sun2005 ER - TY - JOUR AU - Hsin, J. AU - Arkhipov, A. AU - Yin, Y. AU - Stone, J. E. AU - Schulten, K. PY - 2008 DA - 2008// TI - Using VMD: an introductory tutorial JO - Curr Protoc Bioinformatics VL - 5 ID - Hsin2008 ER - TY - JOUR AU - Schubert, H. L. AU - Blumenthal, R. M. AU - Cheng, X. PY - 2003 DA - 2003// TI - Many paths to methyltransfer: a chronicle of convergence JO - Trends Biochem Sci VL - 28 UR - https://doi.org/10.1016/S0968-0004(03)00090-2 DO - 10.1016/S0968-0004(03)00090-2 ID - Schubert2003 ER - TY - JOUR AU - Korolev, S. AU - Ikeguchi, Y. AU - Skarina, T. AU - Beasley, S. AU - Arrowsmith, C. AU - Edwards, A. AU - Joachimiak, A. AU - Pegg, A. E. AU - Savchenko, A. PY - 2002 DA - 2002// TI - The crystal structure of spermidine synthase with a multisubstrate adduct inhibitor JO - Nat Struct Biol VL - 9 UR - https://doi.org/10.1038/nsb737 DO - 10.1038/nsb737 ID - Korolev2002 ER - TY - JOUR AU - Jansson, A. AU - Koskiniemi, H. AU - Erola, A. AU - Wang, J. AU - Mantsala, P. AU - Schneider, G. AU - Niemi, J. PY - 2005 DA - 2005// TI - Aclacinomycin 10-hydroxylase is a novel substrate-assisted hydroxylase requiring S-adenosyl-L-methionine as cofactor JO - J Biol Chem VL - 280 UR - https://doi.org/10.1074/jbc.M412095200 DO - 10.1074/jbc.M412095200 ID - Jansson2005 ER - TY - JOUR AU - Dong, A. AU - Yoder, J. A. AU - Zhang, X. AU - Zhou, L. AU - Bestor, T. H. AU - Cheng, X. PY - 2001 DA - 2001// TI - Structure of human DNMT2, an enigmatic DNA methyltransferase homolog that displays denaturant-resistant binding to DNA JO - Nucleic Acids Res VL - 29 UR - https://doi.org/10.1093/nar/29.2.439 DO - 10.1093/nar/29.2.439 ID - Dong2001 ER - TY - JOUR AU - McCulloch, V. AU - Shadel, G. S. PY - 2003 DA - 2003// TI - Human mitochondrial transcription factor B1 interacts with the C-terminal activation region of h-mtTFA and stimulates transcription independently of its RNA methyltransferase activity JO - Mol Cell Biol VL - 23 UR - https://doi.org/10.1128/MCB.23.16.5816-5824.2003 DO - 10.1128/MCB.23.16.5816-5824.2003 ID - McCulloch2003 ER - TY - JOUR AU - Bujnicki, J. M. PY - 2001 DA - 2001// TI - In silico analysis of the tRNA: m1A58 methyltransferase family: homology-based fold prediction and identification of new members from Eubacteria and Archaea JO - FEBS Lett VL - 507 UR - https://doi.org/10.1016/S0014-5793(01)02962-3 DO - 10.1016/S0014-5793(01)02962-3 ID - Bujnicki2001 ER - TY - JOUR AU - Bujnicki, J. M. PY - 2002 DA - 2002// TI - Sequence permutations in the molecular evolution of DNA methyltransferases JO - BMC Evol Biol VL - 2 UR - https://doi.org/10.1186/1471-2148-2-3 DO - 10.1186/1471-2148-2-3 ID - Bujnicki2002 ER - TY - JOUR AU - Martin, J. L. AU - McMillan, F. M. PY - 2002 DA - 2002// TI - SAM (dependent) I AM: the S-adenosylmethionine-dependent methyltransferase fold JO - Curr Opin Struct Biol VL - 12 UR - https://doi.org/10.1016/S0959-440X(02)00391-3 DO - 10.1016/S0959-440X(02)00391-3 ID - Martin2002 ER - TY - JOUR AU - Babor, M. AU - Sobolev, V. AU - Edelman, M. PY - 2002 DA - 2002// TI - Conserved positions for ribose recognition: importance of water bridging interactions among ATP, ADP and FAD-protein complexes JO - J Mol Biol VL - 323 UR - https://doi.org/10.1016/S0022-2836(02)00975-0 DO - 10.1016/S0022-2836(02)00975-0 ID - Babor2002 ER - TY - JOUR AU - Cheng, X. AU - Collins, R. E. AU - Zhang, X. PY - 2005 DA - 2005// TI - Structural and sequence motifs of protein (histone) methylation enzymes JO - Annu Rev Biophys Biomol Struct VL - 34 UR - https://doi.org/10.1146/annurev.biophys.34.040204.144452 DO - 10.1146/annurev.biophys.34.040204.144452 ID - Cheng2005 ER - TY - JOUR AU - Daniels, D. S. AU - Tainer, J. A. PY - 2000 DA - 2000// TI - Conserved structural motifs governing the stoichiometric repair of alkylated DNA by O(6)-alkylguanine-DNA alkyltransferase JO - Mutat Res VL - 460 UR - https://doi.org/10.1016/S0921-8777(00)00024-0 DO - 10.1016/S0921-8777(00)00024-0 ID - Daniels2000 ER - TY - JOUR AU - Timinskas, A. AU - Butkus, V. AU - Janulaitis, A. PY - 1995 DA - 1995// TI - Sequence motifs characteristic for DNA [cytosine-N4] and DNA [adenine-N6] methyltransferases. Classification of all DNA methyltransferases JO - Gene VL - 157 UR - https://doi.org/10.1016/0378-1119(94)00783-O DO - 10.1016/0378-1119(94)00783-O ID - Timinskas1995 ER - TY - JOUR AU - Malone, T. AU - Blumenthal, R. M. AU - Cheng, X. PY - 1995 DA - 1995// TI - Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyltransferases, and suggests a catalytic mechanism for these enzymes JO - J Mol Biol VL - 253 UR - https://doi.org/10.1006/jmbi.1995.0577 DO - 10.1006/jmbi.1995.0577 ID - Malone1995 ER - TY - JOUR AU - Albalat, R. AU - Marti-Solans, J. AU - Canestro, C. PY - 2012 DA - 2012// TI - DNA methylation in amphioxus: from ancestral functions to new roles in vertebrates JO - Brief Funct Genomics VL - 11 UR - https://doi.org/10.1093/bfgp/els009 DO - 10.1093/bfgp/els009 ID - Albalat2012 ER - TY - JOUR AU - Kuang, D. AU - Yao, Y. AU - Wang, M. AU - Pattabiraman, N. AU - Kotra, L. P. AU - Hampson, D. R. PY - 2003 DA - 2003// TI - Molecular similarities in the ligand binding pockets of an odorant receptor and the metabotropic glutamate receptors JO - J Biol Chem VL - 278 UR - https://doi.org/10.1074/jbc.M307120200 DO - 10.1074/jbc.M307120200 ID - Kuang2003 ER - TY - JOUR AU - Schapira, M. PY - 2011 DA - 2011// TI - Structural Chemistry of Human SET Domain Protein Methyltransferases JO - Current chemical genomics VL - 5 UR - https://doi.org/10.2174/1875397301005010085 DO - 10.2174/1875397301005010085 ID - Schapira2011 ER - TY - JOUR AU - Xie, P. AU - Tian, C. Y. AU - Zhang, L. Q. AU - An, L. G. AU - He, F. C. PY - 2007 DA - 2007// TI - Progress in the study of histone methyltransferases JO - Yi chuan = Hereditas / Zhongguo yi chuan xue hui bian ji VL - 29 UR - https://doi.org/10.1360/yc-007-1035 DO - 10.1360/yc-007-1035 ID - Xie2007 ER - TY - JOUR AU - Ng, H. H. AU - Feng, Q. AU - Wang, H. AU - Erdjument-Bromage, H. AU - Tempst, P. AU - Zhang, Y. AU - Struhl, K. PY - 2002 DA - 2002// TI - Lysine methylation within the globular domain of histone H3 by Dot1 is important for telomeric silencing and Sir protein association JO - Genes Dev VL - 16 UR - https://doi.org/10.1101/gad.1001502 DO - 10.1101/gad.1001502 ID - Ng2002 ER - TY - JOUR AU - Rodriguez, V. AU - Vasudevan, S. AU - Noma, A. AU - Carlson, B. A. AU - Green, J. E. AU - Suzuki, T. AU - Chandrasekharappa, S. C. PY - 2012 DA - 2012// TI - Structure-function analysis of human TYW2 enzyme required for the biosynthesis of a highly modified Wybutosine (yW) base in phenylalanine-tRNA JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0039297 DO - 10.1371/journal.pone.0039297 ID - Rodriguez2012 ER -