Modeling protein conformational transitions by a combination of coarse-grained normal mode analysis and robotics-inspired methods

Table 2 Comparison between overlap values for C_α-based ENMs and tripeptide-based ENMs

Protein	C_αOverlap		Tripep. Overlap
	Open	Close	Open	Close
Che Y Protein	0.32	0.34	0.52	0.34
LAO binding Protein	0.84	0.40	0.53	0.52
Triglyceride Lipase	0.30	0.17	0.26	0.35
Thymidulate Synthase	0.56	0.40	0.49	0.29
Maltodextrine Binding Protein	0.86	0.77	0.90	0.84
Enolase	0.33	0.30	0.40	0.30
Diphtheria Toxin	0.58	0.37	0.48	0.30

ISSN: 1472-6807