Skip to main content

Table 1 MAR statistics for 50 non-pseudoknotted sequences.

From: Enhancement of accuracy and efficiency for RNA secondary structure prediction by sequence segmentation and MapReduce

Cut

Regular

Centered

Optimized

Prediction

Mean

Stdev

p

Mean

Stdev

p

Mean

Stdev

p

IPknot

1.13

0.32

0.002

1.23

0.36

0.000

1.21

0.36

0.000

pknotsRG

1.19

0.50

0.005

1.27

0.49

0.000

1.27

0.47

0.000

HotKnots

1.19

0.48

0.003

1.32

0.50

0.000

1.33

0.50

0.000

NUPACK

1.12

0.34

0.010

1.23

0.41

0.000

1.24

0.41

0.000

PKNOTS

1.33

0.19

0.000

1.65

0.35

0.000

1.70

0.35

0.000

UNAFold

1.19

0.49

0.003

1.31

0.47

0.000

1.31

0.46

0.000

RNAfold

1.19

0.46

0.002

1.31

0.48

0.000

1.30

0.45

0.000

  1. Mean and standard deviations of MAR for regular, centered, and optimized chunking methods over 50 non-pseudoknotted sequences, and the corresponding p-values of the t-test for mean MAR > 1.