|
Cut
|
Regular
|
Centered
|
Optimized
|
|---|
|
Prediction
|
Mean
|
Stdev
|
p
|
Mean
|
Stdev
|
p
|
Mean
|
Stdev
|
p
|
|
IPknot
|
1.13
|
0.32
|
0.002
|
1.23
|
0.36
|
0.000
|
1.21
|
0.36
|
0.000
|
|
pknotsRG
|
1.19
|
0.50
|
0.005
|
1.27
|
0.49
|
0.000
|
1.27
|
0.47
|
0.000
|
|
HotKnots
|
1.19
|
0.48
|
0.003
|
1.32
|
0.50
|
0.000
|
1.33
|
0.50
|
0.000
|
|
NUPACK
|
1.12
|
0.34
|
0.010
|
1.23
|
0.41
|
0.000
|
1.24
|
0.41
|
0.000
|
|
PKNOTS
|
1.33
|
0.19
|
0.000
|
1.65
|
0.35
|
0.000
|
1.70
|
0.35
|
0.000
|
|
UNAFold
|
1.19
|
0.49
|
0.003
|
1.31
|
0.47
|
0.000
|
1.31
|
0.46
|
0.000
|
|
RNAfold
|
1.19
|
0.46
|
0.002
|
1.31
|
0.48
|
0.000
|
1.30
|
0.45
|
0.000
|
- Mean and standard deviations of MAR for regular, centered, and optimized chunking methods over 50 non-pseudoknotted sequences, and the corresponding p-values of the t-test for mean MAR > 1.
