Skip to main content

Table 1 MAR statistics for 50 non-pseudoknotted sequences.

From: Enhancement of accuracy and efficiency for RNA secondary structure prediction by sequence segmentation and MapReduce

Cut Regular Centered Optimized
Prediction Mean Stdev p Mean Stdev p Mean Stdev p
IPknot 1.13 0.32 0.002 1.23 0.36 0.000 1.21 0.36 0.000
pknotsRG 1.19 0.50 0.005 1.27 0.49 0.000 1.27 0.47 0.000
HotKnots 1.19 0.48 0.003 1.32 0.50 0.000 1.33 0.50 0.000
NUPACK 1.12 0.34 0.010 1.23 0.41 0.000 1.24 0.41 0.000
PKNOTS 1.33 0.19 0.000 1.65 0.35 0.000 1.70 0.35 0.000
UNAFold 1.19 0.49 0.003 1.31 0.47 0.000 1.31 0.46 0.000
RNAfold 1.19 0.46 0.002 1.31 0.48 0.000 1.30 0.45 0.000
  1. Mean and standard deviations of MAR for regular, centered, and optimized chunking methods over 50 non-pseudoknotted sequences, and the corresponding p-values of the t-test for mean MAR > 1.