| |
Non-pseudoknotted sequences
| |
Pseudoknotted sequences
|
|---|
|
Prediction
|
R-co
|
R-rs
|
C-co
|
C-rs
|
O-co
|
O-rs
|
R-co
|
R-rs
|
C-co
|
C-rs
|
O-co
|
O-rs
|
|
IPknot
|
7.7
|
74.0
|
24.7
|
115.5
|
17.7
|
110.5
|
2.0
|
32.0
|
7.0
|
47.0
|
14.0
|
59.0
|
|
pknotsRG
|
6.3
|
71.5
|
22.3
|
115.5
|
21.3
|
113.0
|
2.0
|
30.0
|
7.0
|
50.0
|
14.0
|
58.0
|
|
HotKnots
|
4.0
|
68.0
|
22.0
|
115.5
|
24.0
|
116.5
|
1.0
|
32.0
|
6.0
|
47.0
|
16.0
|
59.0
|
|
NUPACK
|
4.0
|
68.5
|
17.0
|
115.5
|
29.0
|
120.0
|
1.3
|
24.5
|
7.3
|
40.5
|
9.3
|
43.0
|
|
PKNOTS
|
1.0
|
55.5
|
17.5
|
114.5
|
31.5
|
130.0
|
1.5
|
21.0
|
4.0
|
35.5
|
11.5
|
45.5
|
|
UNAFold
|
4.0
|
67.0
|
25.0
|
118.0
|
21.0
|
115.0
| | | | | | |
|
RNAfold
|
4.0
|
65.0
|
18.0
|
112.5
|
28.0
|
122.5
| | | | | | |
- Count (co) and rank sum (rs) of sequences attaining the highest MAR with each chunking method for the various prediction programs.
