Table 4 Count and rank sum of sequences
| Â | Non-pseudoknotted sequences | Â | Pseudoknotted sequences | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Prediction | R-co | R-rs | C-co | C-rs | O-co | O-rs | R-co | R-rs | C-co | C-rs | O-co | O-rs |
IPknot | 7.7 | 74.0 | 24.7 | 115.5 | 17.7 | 110.5 | 2.0 | 32.0 | 7.0 | 47.0 | 14.0 | 59.0 |
pknotsRG | 6.3 | 71.5 | 22.3 | 115.5 | 21.3 | 113.0 | 2.0 | 30.0 | 7.0 | 50.0 | 14.0 | 58.0 |
HotKnots | 4.0 | 68.0 | 22.0 | 115.5 | 24.0 | 116.5 | 1.0 | 32.0 | 6.0 | 47.0 | 16.0 | 59.0 |
NUPACK | 4.0 | 68.5 | 17.0 | 115.5 | 29.0 | 120.0 | 1.3 | 24.5 | 7.3 | 40.5 | 9.3 | 43.0 |
PKNOTS | 1.0 | 55.5 | 17.5 | 114.5 | 31.5 | 130.0 | 1.5 | 21.0 | 4.0 | 35.5 | 11.5 | 45.5 |
UNAFold | 4.0 | 67.0 | 25.0 | 118.0 | 21.0 | 115.0 | Â | Â | Â | Â | Â | Â |
RNAfold | 4.0 | 65.0 | 18.0 | 112.5 | 28.0 | 122.5 | Â | Â | Â | Â | Â | Â |