| Non-pseudoknotted sequences | Pseudoknotted sequences | ||||||
---|---|---|---|---|---|---|---|---|
Prediction | R-C-O | C-O | R-C | R-O | R-C-O | C-O | R-C | R-O |
IPknot | 9.21E-06 | 5.27E-01 | 2.43E-05 | 4.02E-04 | 2.16E-05 | 4.55E-02 | 4.50E-03 | 3.74E-05 |
pknotsRG | 1.82E-07 | 5.27E-01 | 1.86E-06 | 9.72E-06 | 3.65E-06 | 1.84E-02 | 1.08E-04 | 9.62E-05 |
HotKnots | 8.80E-09 | 6.47E-01 | 4.20E-07 | 5.36E-07 | 2.47E-05 | 1.84E-02 | 1.30E-03 | 1.62E-04 |
NUPACK | 5.16E-09 | 2.17E-01 | 5.79E-08 | 1.41E-06 | 3.70E-04 | 5.64E-01 | 9.11E-04 | 1.30E-03 |
PKNOTS | 1.22E-15 | 2.69E-02 | 3.56E-10 | 1.18E-11 | 6.78E-06 | 6.70E-03 | 5.32E-04 | 1.83E-04 |
UNAFold | 5.25E-09 | 2.74E-01 | 6.91E-07 | 2.96E-07 | Â | Â | Â | Â |
RNAfold | 1.18E-08 | 8.82E-01 | 1.29E-06 | 1.81E-07 | Â | Â | Â | Â |