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Table 7 Total times for RNA2 and RNA1 with fine-grained mapping

From: Enhancement of accuracy and efficiency for RNA secondary structure prediction by sequence segmentation and MapReduce

Mean Total Time (sec)

RNA2(∼ 1300 bases)

RNA1(∼ 3100 bases)

 

60

150

300

60

150

300

Centered

257.7

232.3

185.7

3228.7

2871.7

2303.9

Optimized

226.6

197.4

164.6

2758.0

2366.0

1907.7

Opti./Cent.

0.88

0.85

0.89

0.85

0.82

0.83

  1. Average total times for the seven sequences in RNA2 and in RNA1 for fine-grained mapping using centered and optimized methods.