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Figure 1 | BMC Structural Biology

Figure 1

From: A population-based evolutionary search approach to the multiple minima problem in de novo protein structure prediction

Figure 1

The native state, labeled N, is associated with the free-energy minimum and is expected to consist of conformations located at the deepest unique basin of the protein energy surface [16]. In contrast to this classic illustration, adapted from [16], the illustration to the right shows that the actual surface reconstructed by current energy functions is often weakly-funneled, rich in local minima, and with non-native states in deeper basins than the native state.

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