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Table 2 Class II MHC-Peptide complexes in the protein databank

From: Types of inter-atomic interactions at the MHC-peptide interface: Identifying commonality from accumulated data

MHC source PDB code MHC allele Peptide sequence Peptide length Peptide source Resolution (Å)
Human 1FV1 DR2 NPVVHFFKNIVTPRTPPPSQ 20 Myelin basic protein 1.90
Human 1AQD DR1 VGSDWRFLRGYHQYA 15 Endogenous peptide 2.45
Human 1BX2 DR2 ENPVVHFFKNIVTPR 15 HMBP 2.60
Human 1A6A DR3 PVSKMRMATPLLMQA 15 CLIP fragment 2.75
Human 1DLH DR1 PKYVKQNTLKLAT 13 Influenza virus 2.80
Human 1SEB DR1 AAAAAAAAAAAAA 13 Endogenous peptide 2.70
Human 1FYT DR1 PKYVKQNTLKLAT 13 Influenza HA antigen peptide 2.60
Human 2SEB DR4 AYMRADAAAGGA 12 Collagen II 2.50
Murine 1IAO I-AD RGISQAVHAAHAEI 14 Egg ovalbumin 2.60
Murine 2IAD I-AD GHATQGVTAASSHE 14 Influenza hemagglutinin 2.40
  1. References: 1FV1 [63]; 1AQD [64]; 1BX2 [65]; 1A6A [66]; 1DLH [67]; 1SEB [68]; 1FYT [69]; 2SEB [70]; 1IAO, 2IAD [71].