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Table 4 Performance of different move sets and search techniques on a set of six proteins.

From: A comprehensive analysis of 40 blind protein structure predictions

Method

RMSD range (Ã…)(average)

Percentage ≤ 6.0 Å (average %)

3-residue fragments + MC

4.5 – 14.9

4.1

14-state φ/ψ model + MC

4.6 – 15.1

4.2

3-residue fragments + MC + GA

4.2 – 14.2

4.6

14-state φ/ψ model + MC + GA

4.1 – 13.8

4.8

fragments + 14-state model + MC + GA

3.8 – 14.4

9.3

  1. For each combination of methods, the Cα RMSD range and the percentage of conformations within 6.0 Å Cα RMSD are given. The results are over six proteins and 10,000 decoys each, and each trajectory to produce a single decoy consisted of 50,000 steps. The combination of the two move sets and the two search techniques performs the best.
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BMC Structural Biology

ISSN: 1472-6807

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