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Table 2 Target sequences selected for alignment. The Ψ-BLAST/QUEST search strategy (Methods Sectn.) when started with the two target sequences indicated by "SEED", selected the sequences indicated in each subtable: (a) MVL and (b) FV1. The sequences are identified as in Table 1. (* the C-terminal domain of this sequence appears to be replaced by an oncogene.)

From: Consensus structural models for the amino terminal domain of the retrovirus restriction gene Fv1 and the Murine Leukaemia Virus capsid proteins

(a) MLV

SEED

AAD55051

215–432

gi-120892

sp-P03330

207–423

gi-2393894

gb-AAC58239

206–434

gi-419481

pir-A46312

199–423

gi-323873

gb-AAA43041

203–418*

gi-7548235

gb-AAA4306

206–422

gi-5726238

gb-AAD48375

156–352

(b) FV1

gi-7521942

T29096

 

gi-23485357

gb-EAA20381.1

 

gi-3913713

sp-P70213

FV1 MOUSE