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Table 1 Classification accuracy. Agreement with the SCOP classification database. For every classification level the percentage of domains with a nearest neighbor in the same classification group is given for the SSEF, LFF, SGM, and PRIDE2 methods. The classification accuracy per group is given as supplementary material [see Additional file 1].

From: Secondary structure spatial conformation footprint: a novel method for fast protein structure comparison and classification

 

% accuracy

% accuracy over groups

SCOP

ssef

lff

sgm

pride

sse

lff

sgm

pride

fold

75.4

68.7

69.1

48.4

62.8

57.2

57.1

38.9

s.family

70.8

67.1

65.3

47.4

58.8

56.5

54.8

39.2

family

65.4

66.9

63.1

49.8

56.2

58.3

54.5

41.5