Skip to main content

Advertisement

Table 1 Classification accuracy. Agreement with the SCOP classification database. For every classification level the percentage of domains with a nearest neighbor in the same classification group is given for the SSEF, LFF, SGM, and PRIDE2 methods. The classification accuracy per group is given as supplementary material [see Additional file 1].

From: Secondary structure spatial conformation footprint: a novel method for fast protein structure comparison and classification

  % accuracy % accuracy over groups
SCOP ssef lff sgm pride sse lff sgm pride
fold 75.4 68.7 69.1 48.4 62.8 57.2 57.1 38.9
s.family 70.8 67.1 65.3 47.4 58.8 56.5 54.8 39.2
family 65.4 66.9 63.1 49.8 56.2 58.3 54.5 41.5