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Table 2 Comparisons of our algorithm with method of [24] for circularly permuted proteins.

From: Revealing divergent evolution, identifying circular permutations and detecting active-sites by protein structure comparison

  ID/Size ID/Size SAMO Method in [24]
    λ rms m rms m
Naturally occurring 1RIN/180 2CNA/237 6.0 1.581 174 0.877 45
  1RSY/121 1QAS/123 6.0 1.741 118 1.107 44
  1NKL/78 1QDM/74 6.0 2.852 72 1.823 48
  1ONR/316 1FBA/360 6.0 3.016 244 2.444 77
  1AQI/382 1BOO/282 6.0 3.329 200 3.571 66
Human made 1AVD/123 1SWG/112 6.0 2.499 98 0.815 66
  1GBG/214 1AJK/212 6.0 2.879 182 0.347 110