Revealing divergent evolution, identifying circular permutations and detecting active-sites by protein structure comparison

Table 3 Comparisons of our algorithm with method of [14].

ID/Size	ID/Size	SAMO			Method in [14]
		Score	rms	m	Score	rms	m
1CHO/238	1CHO/238	1.00	0.00	238	1.00	0. 00	238
1CHO/238	2CHA/236	0.99	0.55	236	0.99	0. 55	236
1CHO/238	2PTCE/223	0.85	0.85	212	0.84	0.85	211
1CHO/238	1TPO/223	0.82	0.80	208	0.81	0. 81	207
1CHO/238	1TGSE/225	0.78	0.88	203	0.78	0.89	203
1CHO/238	2PRK/279	0.25	1.77	104	0.25	1. 67	103
1CHO/238	3ACT/218	0.26	1.69	93	0.25	1.69	86
1CHO/238	1SBT/275	0.25	1.87	111	0.24	1. 76	96
1CHO/238	2SECE/274	0.27	1.90	117	0.23	1. 78	95
1CHO/238	1FX1/147	0.23	1.94	80	0.23	1.69	71
1CHO/238	1CSE/274	0.26	1.89	117	0.23	1.72	94
1CHO/238	1TECE/279	0.27	1.94	105	0.22	1.79	94
1CHO/238	9PAP/212	0.29	1.99	102	0.22	1. 74	81

ISSN: 1472-6807