Skip to main content

Advertisement

Table 3 Comparisons of our algorithm with method of [14].

From: Revealing divergent evolution, identifying circular permutations and detecting active-sites by protein structure comparison

ID/Size ID/Size SAMO Method in [14]
   Score rms m Score rms m
1CHO/238 1CHO/238 1.00 0.00 238 1.00 0. 00 238
1CHO/238 2CHA/236 0.99 0.55 236 0.99 0. 55 236
1CHO/238 2PTCE/223 0.85 0.85 212 0.84 0.85 211
1CHO/238 1TPO/223 0.82 0.80 208 0.81 0. 81 207
1CHO/238 1TGSE/225 0.78 0.88 203 0.78 0.89 203
1CHO/238 2PRK/279 0.25 1.77 104 0.25 1. 67 103
1CHO/238 3ACT/218 0.26 1.69 93 0.25 1.69 86
1CHO/238 1SBT/275 0.25 1.87 111 0.24 1. 76 96
1CHO/238 2SECE/274 0.27 1.90 117 0.23 1. 78 95
1CHO/238 1FX1/147 0.23 1.94 80 0.23 1.69 71
1CHO/238 1CSE/274 0.26 1.89 117 0.23 1.72 94
1CHO/238 1TECE/279 0.27 1.94 105 0.22 1.79 94
1CHO/238 9PAP/212 0.29 1.99 102 0.22 1. 74 81