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Table 1 Proteins found with BLAST search producing alignments (E value ≤ 1 × 10-20) with the sequence of HlyU from V. cholerae are shown together with proteins with known 3D structure

From: Molecular modeling and characterization of Vibrio cholerae transcription regulator HlyU

Genebank code Protein description Organism Score (bits) E Sequence identity (%)
ZP_00992718.1 Transcription activator HlyU Vibrio splendidus 137 2 × 10-31 82
ZP_01065735.1 Transcription activator HlyU Vibrio sp. 135 4 × 10-31 82
NP_759503.1 Transcription activator HlyU Vibrio vulnificus 132 6 × 10-30 82
NP_796908.1 Transcription activator HlyU Vibrio parahaemolyticus 130 2 × 10-29 83
ZP_01261951.1 Transcription activator HlyU Vibrio alginolyticus 129 5 × 10-29 83
ZP_00761653.1 Predicted transcriptional regulator Vibrio sp. 129 6 × 10-29 83
YP_128811.1 Putative transcription activator HlyU Photobacterium profundum 126 3 × 10-28 75
YP_203846.1 Transcription activator HlyU Vibrio fischeri 124 2 × 10-27 73
NP_719085.1 Transcription activator HlyU Shewanella oneidensis 109 4 × 10-23 64
YP_751572.1 Transcriptional regulator, ArsR family protein Shewanella frigidimarina 107 1 × 10-22 63
ZP_01437145.1 Transcriptional regulator, ArsR family protein Shewanella baltica 106 2 × 10-22 63
ZP_00838999.1 Regulatory protein, ArsR Shewanella sp. 105 5 × 10-22 63
YP_563729.1 Regulatory protein, ArsR Shewanella denitrificans 105 5 × 10-22 63
ZP_01305695.1 Transcription activator HlyU Oceanobacter sp. 101 1 × 10-20 58
Proteins with known 3D structurea      
PDB code: 1u2w Cadmium efflux system accessory protein CadC Staphylococcus aureus 46.2 2 × 10-06 34
PDB code: 1r1u Repressor protein CzrAb Staphylococcus aureus 45.4 3 × 10-06 33
PDB code: 1smt Transcriptional repressor SmtBb Synechococcus sp. 36.2 0.002 37
  1. a Found from a BLAST search on PDB.
  2. b A few other closely related structures have PDB codes 1r1v and (1r22, 1r23 and 1r1t).