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Table 1 Number of transitions in the final 36 states HMM

From: Analysis of an optimal hidden Markov model for secondary structure prediction

Transitions

N init

N final

N >0.1

Ratio final

Helix to helix

225

81

24

36%

Helix to coil

180

47

9

26%

Helix to strand

135

21

0

15%

Strand to Strand

81

46

20

57%

Strand to coil

108

50

5

46%

Strand to helix

135

17

0

13%

Coil to coil

144

98

25

68%

Coil to helix

180

31

2

17%

Coil to strand

108

57

4

29%

Total

1296

448

89

34%

  1. N init : number of allowed transitions in the initial model, N final : number of non-null transitions in the final model, N>0.1: number of transitions associated with probabilities greater than 0.1 in the final model, Ratio final : percentage of non-null transitions relative to the initial number.
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BMC Structural Biology

ISSN: 1472-6807

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