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Table 2 Occurences of coil states in different types of loops in the Viterbi paths of the cross-validation data set

From: Analysis of an optimal hidden Markov model for secondary structure prediction

 

α/α

β/β

α/β

β/α

frequency

c1

3308

57

30

3962

5.2

c2

2686

10374

2920

6941

16.1

c3

14

5880

124

3014

6.3

c4

1953

151

2312

170

3.2

c5

2327

225

3101

231

4.1

c6

5276

2894

5609

2579

11.5

c7

3165

6684

2996

5691

13.0

c8

1677

6364

3054

2223

9.4

c9

2

2382

429

7

2.0

c10

1359

6670

3375

1671

9.2

c11

2828

5477

3585

2748

10.3

c12

3969

2943

4882

2025

9.7

frequency

20.1

35.2

22.8

21.9

 
  1. Frequency denotes the marginal distribution of each variable (hidden states or loop type), in percentage.