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Table 5 Q3 scores obtained for the 505 sequences of the independent test set using multiple sequence information

From: Analysis of an optimal hidden Markov model for secondary structure prediction

 

Test k a k s i a MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqGubavcqqGLbqzcqqGZbWCcqqG0baDdaqhaaWcbaGaem4AaSMaemyyaeMaem4AaSMaem4CamNaemyAaKgabaGaemyyaegaaaaa@3A53@

Test d s s p b MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqGubavcqqGLbqzcqqGZbWCcqqG0baDdaqhaaWcbaGaemizaqMaem4CamNaem4CamNaemiCaahabaGaemOyaigaaaaa@391A@

Test s t r i d e c MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqGubavcqqGLbqzcqqGZbWCcqqG0baDdaqhaaWcbaGaem4CamNaemiDaqNaemOCaiNaemyAaKMaemizaqMaemyzaugabaGaem4yamgaaaaa@3BD0@

OSS-HMM k a k s i d MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqGpbWtcqqGtbWucqqGtbWucqqGTaqlcqqGibascqqGnbqtcqqGnbqtdaqhaaWcbaGaem4AaSMaemyyaeMaem4AaSMaem4CamNaemyAaKgabaGaemizaqgaaaaa@3CB6@

76.3

74.4

75.2

OSS-HMM dssp

73.8

75.5

75.4

OSS-HMM stride

75.3

76.02

76.7

PSIPRED

78.6

80.5

81.2

  1. a: evaluation using kaksi assignment, b: evaluation using DSSP assignment, c: evaluation using STRIDE assignment. d: OSS-HMM x denotes 36 state HMM trained using x assignment.