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Table 2 Sequence and structural statistics for various Rieske oxygenases compared to biphenyl 2,3-dioxygenase

From: Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1

Ferredoxin (PDB ID)

RMSD (Cα)

Sequence identity

Sequence similarity

BPDO-FLB400 (1FQT)

1.017 (97)

36.6 %

56.4 %

T4MOC-F (1SJG)

1.697 (93)

24.1 %

52.7 %

CARDO-FCA10 (1VCK)

1.312 (98)

36.3 %

60.8 %

Terminal oxygenase α Subunit (PDB ID)

RMSD (Cα)

Sequence identity

Sequence similarity

NDO-O9816-4 (1NDO)

1.24 (420)

43.5 %

62.0 %

NBDO-OJS765 (2BMO)

1.23 (413)

41.2 %

59.4 %

BPDO-ORHA1 (1ULI)

1.48 (388)

39.6 %

55.1 %

CDO-OIP01 (1WQL)

1.50 (377)

36.8 %

52.7 %

NDO-O12038 (2B1X)

1.59 (358)

35.0 %

52.5 %

Terminal oxygenase β Subunit (PDB ID)

RMSD (Cα)

Sequence identity

Sequence similarity

NDO-O9816-4 (1NDO)

1.19 (156)

28.1 %

46.0 %

NBDO-OJS765 (2BMO)

1.19 (160)

29.5 %

47.0 %

BPDO-ORHA1 (1ULI)

1.15 (159)

31.6 %

53.2 %

CDO-OIP01 (1WQL)

1.17 (161)

31.8 %

48.6 %

NDO-O12038 (2B1X)

1.20 (156)

35.3 %

49.3 %