TY - JOUR AU - Kornberg, R. D. AU - Thomas, J. O. PY - 1974 DA - 1974// TI - Chromatin structure; oligomers of the histones JO - Science VL - 184 UR - https://doi.org/10.1126/science.184.4139.865 DO - 10.1126/science.184.4139.865 ID - Kornberg1974 ER - TY - JOUR AU - Luger, K. AU - Mader, A. W. AU - Richmond, R. K. AU - Sargent, D. F. AU - Richmond, T. J. PY - 1997 DA - 1997// TI - Crystal structure of the nucleosome core particle at 2.8 A resolution JO - Nature VL - 389 UR - https://doi.org/10.1038/38444 DO - 10.1038/38444 ID - Luger1997 ER - TY - JOUR AU - Arents, G. AU - Burlingame, R. W. AU - Wang, B. C. AU - Love, W. E. AU - Moudrianakis, E. N. PY - 1991 DA - 1991// TI - The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix JO - Proc Natl Acad Sci USA VL - 88 UR - https://doi.org/10.1073/pnas.88.22.10148 DO - 10.1073/pnas.88.22.10148 ID - Arents1991 ER - TY - JOUR AU - Arents, G. AU - Moudrianakis, E. N. PY - 1993 DA - 1993// TI - Topography of the histone octamer surface: repeating structural motifs utilized in the docking of nucleosomal DNA JO - Proc Natl Acad Sci USA VL - 90 UR - https://doi.org/10.1073/pnas.90.22.10489 DO - 10.1073/pnas.90.22.10489 ID - Arents1993 ER - TY - JOUR AU - Arents, G. AU - Moudrianakis, E. N. PY - 1995 DA - 1995// TI - The histone fold: a ubiquitous architectural motif utilized in DNA compaction and protein dimerization JO - Proc Natl Acad Sci USA VL - 92 UR - https://doi.org/10.1073/pnas.92.24.11170 DO - 10.1073/pnas.92.24.11170 ID - Arents1995 ER - TY - JOUR AU - Lupas, A. N. AU - Ponting, C. P. AU - Russell, R. B. PY - 2001 DA - 2001// TI - On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world? JO - J Struct Biol VL - 134 UR - https://doi.org/10.1006/jsbi.2001.4393 DO - 10.1006/jsbi.2001.4393 ID - Lupas2001 ER - TY - JOUR AU - Soding, J. AU - Lupas, A. N. PY - 2003 DA - 2003// TI - More than the sum of their parts: on the evolution of proteins from peptides JO - Bioessays VL - 25 UR - https://doi.org/10.1002/bies.10321 DO - 10.1002/bies.10321 ID - Soding2003 ER - TY - CHAP AU - Fetrow, J. S. AU - Godzik, A. PY - 1998 DA - 1998// TI - Function driven protein evolution. A possible proto-protein for the RNA-binding proteins BT - Pac Symp Biocomput ID - Fetrow1998 ER - TY - JOUR AU - Pereira, S. L. AU - Grayling, R. A. AU - Lurz, R. AU - Reeve, J. N. PY - 1997 DA - 1997// TI - Archaeal nucleosomes JO - Proc Natl Acad Sci USA VL - 94 UR - https://doi.org/10.1073/pnas.94.23.12633 DO - 10.1073/pnas.94.23.12633 ID - Pereira1997 ER - TY - JOUR AU - Bailey, K. A. AU - Chow, C. S. AU - Reeve, J. N. PY - 1999 DA - 1999// TI - Histone stoichiometry and DNA circularization in archaeal nucleosomes JO - Nucleic Acids Res VL - 27 UR - https://doi.org/10.1093/nar/27.2.532 DO - 10.1093/nar/27.2.532 ID - Bailey1999 ER - TY - JOUR AU - Fahrner, R. L. AU - Cascio, D. AU - Lake, J. A. AU - Slesarev, A. PY - 2001 DA - 2001// TI - An ancestral nuclear protein assembly: crystal structure of the Methanopyrus kandleri histone JO - Protein Sci VL - 10 UR - https://doi.org/10.1110/ps.10901 DO - 10.1110/ps.10901 ID - Fahrner2001 ER - TY - JOUR AU - Baxevanis, A. D. AU - Arents, G. AU - Moudrianakis, E. N. AU - Landsman, D. PY - 1995 DA - 1995// TI - A variety of DNA-binding and multimeric proteins contain the histone fold motif JO - Nucleic Acids Res VL - 23 UR - https://doi.org/10.1093/nar/23.14.2685 DO - 10.1093/nar/23.14.2685 ID - Baxevanis1995 ER - TY - JOUR AU - Drlica, K. AU - Rouviere-Yaniv, J. PY - 1987 DA - 1987// TI - Histonelike proteins of bacteria JO - Microbiol Rev VL - 51 ID - Drlica1987 ER - TY - JOUR AU - Qiu, Y. AU - Tereshko, V. AU - Kim, Y. AU - Zhang, R. AU - Collart, F. AU - Yousef, M. AU - Kossiakoff, A. AU - Joachimiak, A. PY - 2006 DA - 2006// TI - The crystal structure of Aq_328 from the hyperthermophilic bacteria Aquifex aeolicus shows an ancestral histone fold JO - Proteins VL - 62 UR - https://doi.org/10.1002/prot.20590 DO - 10.1002/prot.20590 ID - Qiu2006 ER - TY - JOUR AU - Soding, J. PY - 2005 DA - 2005// TI - Protein homology detection by HMM-HMM comparison JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti125 DO - 10.1093/bioinformatics/bti125 ID - Soding2005 ER - TY - JOUR AU - Neuwald, A. F. AU - Aravind, L. AU - Spouge, J. L. AU - Koonin, E. V. PY - 1999 DA - 1999// TI - AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes JO - Genome Res VL - 9 ID - Neuwald1999 ER - TY - CHAP AU - Ammelburg, M. AU - Frickey, T. AU - Lupas, A. N. PY - 2006 DA - 2006// TI - Classification of AAA+ proteins BT - J Struct Biol ID - Ammelburg2006 ER - TY - JOUR AU - Zeth, K. AU - Ravelli, R. B. AU - Paal, K. AU - Cusack, S. AU - Bukau, B. AU - Dougan, D. A. PY - 2002 DA - 2002// TI - Structural analysis of the adaptor protein ClpS in complex with the N-terminal domain of ClpA JO - Nat Struct Biol VL - 9 UR - https://doi.org/10.1038/nsb869 DO - 10.1038/nsb869 ID - Zeth2002 ER - TY - STD TI - Soding J, Biegert A, Lupas AN: The HHpred interactive server for protein homology detection and structure prediction.Nucleic Acids Res 2005, (33 Web Server):W244–248. 10.1093/nar/gki408 ID - ref19 ER - TY - STD TI - Andreeva A, Howorth D, Brenner SE, Hubbard TJ, Chothia C, Murzin AG: SCOP database in 2004: refinements integrate structure and sequence family data.Nucleic Acids Res 2004, (32 Database):D226–229. 10.1093/nar/gkh039 ID - ref20 ER - TY - JOUR AU - Maurizi, M. R. AU - Xia, D. PY - 2004 DA - 2004// TI - Protein binding and disruption by Clp/Hsp100 chaperones JO - Structure VL - 12 UR - https://doi.org/10.1016/j.str.2004.01.021 DO - 10.1016/j.str.2004.01.021 ID - Maurizi2004 ER - TY - JOUR AU - Bennett, M. J. AU - Schlunegger, M. P. AU - Eisenberg, D. PY - 1995 DA - 1995// TI - 3D domain swapping: a mechanism for oligomer assembly JO - Protein Sci VL - 4 UR - https://doi.org/10.1002/pro.5560041202 DO - 10.1002/pro.5560041202 ID - Bennett1995 ER - TY - JOUR AU - Janowski, R. AU - Kozak, M. AU - Jankowska, E. AU - Grzonka, Z. AU - Grubb, A. AU - Abrahamson, M. AU - Jaskolski, M. PY - 2001 DA - 2001// TI - Human cystatin C, an amyloidogenic protein, dimerizes through three-dimensional domain swapping JO - Nat Struct Biol VL - 8 UR - https://doi.org/10.1038/86188 DO - 10.1038/86188 ID - Janowski2001 ER - TY - JOUR AU - Guo, Z. AU - Eisenberg, D. PY - 2006 DA - 2006// TI - Runaway domain swapping in amyloid-like fibrils of T7 endonuclease I JO - Proc Natl Acad Sci USA VL - 103 UR - https://doi.org/10.1073/pnas.0602607103 DO - 10.1073/pnas.0602607103 ID - Guo2006 ER - TY - JOUR AU - Sambashivan, S. AU - Liu, Y. AU - Sawaya, M. R. AU - Gingery, M. AU - Eisenberg, D. PY - 2005 DA - 2005// TI - Amyloid-like fibrils of ribonuclease A with three-dimensional domain-swapped and native-like structure JO - Nature VL - 437 UR - https://doi.org/10.1038/nature03916 DO - 10.1038/nature03916 ID - Sambashivan2005 ER - TY - JOUR AU - Liu, Y. AU - Eisenberg, D. PY - 2002 DA - 2002// TI - 3D domain swapping: as domains continue to swap JO - Protein Sci VL - 11 UR - https://doi.org/10.1110/ps.0201402 DO - 10.1110/ps.0201402 ID - Liu2002 ER - TY - JOUR AU - Piccoli, R. AU - Di Donato, A. AU - D'Alessio, G. PY - 1988 DA - 1988// TI - Co-operativity in seminal ribonuclease function. Kinetic studies JO - Biochem J VL - 253 UR - https://doi.org/10.1042/bj2530329 DO - 10.1042/bj2530329 ID - Piccoli1988 ER - TY - JOUR AU - Gotte, G. AU - Bertoldi, M. AU - Libonati, M. PY - 1999 DA - 1999// TI - Structural versatility of bovine ribonuclease A. Distinct conformers of trimeric and tetrameric aggregates of the enzyme JO - Eur J Biochem VL - 265 UR - https://doi.org/10.1046/j.1432-1327.1999.00761.x DO - 10.1046/j.1432-1327.1999.00761.x ID - Gotte1999 ER - TY - JOUR AU - Schymkowitz, J. W. AU - Rousseau, F. AU - Wilkinson, H. R. AU - Friedler, A. AU - Itzhaki, L. S. PY - 2001 DA - 2001// TI - Observation of signal transduction in three-dimensional domain swapping JO - Nat Struct Biol VL - 8 UR - https://doi.org/10.1038/nsb1001-888 DO - 10.1038/nsb1001-888 ID - Schymkowitz2001 ER - TY - JOUR AU - Murray, A. J. AU - Lewis, S. J. AU - Barclay, A. N. AU - Brady, R. L. PY - 1995 DA - 1995// TI - One sequence, two folds: a metastable structure of CD2 JO - Proc Natl Acad Sci USA VL - 92 UR - https://doi.org/10.1073/pnas.92.16.7337 DO - 10.1073/pnas.92.16.7337 ID - Murray1995 ER - TY - JOUR AU - Green, S. M. AU - Gittis, A. G. AU - Meeker, A. K. AU - Lattman, E. E. PY - 1995 DA - 1995// TI - One-step evolution of a dimer from a monomeric protein JO - Nat Struct Biol VL - 2 UR - https://doi.org/10.1038/nsb0995-746 DO - 10.1038/nsb0995-746 ID - Green1995 ER - TY - JOUR AU - Kortt, A. A. AU - Malby, R. L. AU - Caldwell, J. B. AU - Gruen, L. C. AU - Ivancic, N. AU - Lawrence, M. C. AU - Howlett, G. J. AU - Webster, R. G. AU - Hudson, P. J. AU - Colman, P. M. PY - 1994 DA - 1994// TI - Recombinant anti-sialidase single-chain variable fragment antibody. Characterization, formation of dimer and higher-molecular-mass multimers and the solution of the crystal structure of the single-chain variable fragment/sialidase complex JO - Eur J Biochem VL - 221 UR - https://doi.org/10.1111/j.1432-1033.1994.tb18724.x DO - 10.1111/j.1432-1033.1994.tb18724.x ID - Kortt1994 ER - TY - JOUR AU - Perisic, O. AU - Webb, P. A. AU - Holliger, P. AU - Winter, G. AU - Williams, R. L. PY - 1994 DA - 1994// TI - Crystal structure of a diabody, a bivalent antibody fragment JO - Structure VL - 2 UR - https://doi.org/10.1016/S0969-2126(94)00123-5 DO - 10.1016/S0969-2126(94)00123-5 ID - Perisic1994 ER - TY - JOUR AU - Ogihara, N. L. AU - Ghirlanda, G. AU - Bryson, J. W. AU - Gingery, M. AU - DeGrado, W. F. AU - Eisenberg, D. PY - 2001 DA - 2001// TI - Design of three-dimensional domain-swapped dimers and fibrous oligomers JO - Proc Natl Acad Sci USA VL - 98 UR - https://doi.org/10.1073/pnas.98.4.1404 DO - 10.1073/pnas.98.4.1404 ID - Ogihara2001 ER - TY - JOUR AU - Kinch, L. N. AU - Grishin, N. V. PY - 2002 DA - 2002// TI - Evolution of protein structures and functions JO - Curr Opin Struct Biol VL - 12 UR - https://doi.org/10.1016/S0959-440X(02)00338-X DO - 10.1016/S0959-440X(02)00338-X ID - Kinch2002 ER - TY - JOUR AU - Botos, I. AU - Melnikov, E. E. AU - Cherry, S. AU - Khalatova, A. G. AU - Rasulova, F. S. AU - Tropea, J. E. AU - Maurizi, M. R. AU - Rotanova, T. V. AU - Gustchina, A. AU - Wlodawer, A. PY - 2004 DA - 2004// TI - Crystal structure of the AAA+ alpha domain of E. coli Lon protease at 1.9A resolution JO - J Struct Biol VL - 146 UR - https://doi.org/10.1016/j.jsb.2003.09.003 DO - 10.1016/j.jsb.2003.09.003 ID - Botos2004 ER - TY - JOUR AU - Ogura, T. AU - Whiteheart, S. W. AU - Wilkinson, A. J. PY - 2004 DA - 2004// TI - Conserved arginine residues implicated in ATP hydrolysis, nucleotide-sensing, and inter-subunit interactions in AAA and AAA+ ATPases JO - J Struct Biol VL - 146 UR - https://doi.org/10.1016/j.jsb.2003.11.008 DO - 10.1016/j.jsb.2003.11.008 ID - Ogura2004 ER - TY - CHAP AU - Diemand, A. V. AU - Lupas, A. N. PY - 2006 DA - 2006// TI - Modeling AAA+ ring complexes from monomeric structures BT - J Struct Biol ID - Diemand2006 ER - TY - JOUR AU - Lee, A. Y. AU - Hsu, C. H. AU - Wu, S. H. PY - 2004 DA - 2004// TI - Functional domains of Brevibacillus thermoruber lon protease for oligomerization and DNA binding: role of N-terminal and sensor and substrate discrimination domains JO - J Biol Chem VL - 279 UR - https://doi.org/10.1074/jbc.M403562200 DO - 10.1074/jbc.M403562200 ID - Lee2004 ER - TY - JOUR AU - Brenner, S. E. AU - Koehl, P. AU - Levitt, M. PY - 2000 DA - 2000// TI - The ASTRAL compendium for protein structure and sequence analysis JO - Nucleic Acids Res VL - 28 UR - https://doi.org/10.1093/nar/28.1.254 DO - 10.1093/nar/28.1.254 ID - Brenner2000 ER - TY - JOUR AU - Altschul, S. F. AU - Gish, W. AU - Miller, W. AU - Myers, E. W. AU - Lipman, D. J. PY - 1990 DA - 1990// TI - Basic local alignment search tool JO - J Mol Biol VL - 215 UR - https://doi.org/10.1016/S0022-2836(05)80360-2 DO - 10.1016/S0022-2836(05)80360-2 ID - Altschul1990 ER - TY - JOUR AU - Guex, N. AU - Peitsch, M. C. PY - 1997 DA - 1997// TI - SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling JO - Electrophoresis VL - 18 UR - https://doi.org/10.1002/elps.1150181505 DO - 10.1002/elps.1150181505 ID - Guex1997 ER -