TY - JOUR AU - Schnell, D. J. AU - Hebert, D. N. PY - 2003 DA - 2003// TI - Protein translocons: multifunctional mediators of protein translocation across membranes JO - Cell VL - 112 UR - https://doi.org/10.1016/S0092-8674(03)00110-7 DO - 10.1016/S0092-8674(03)00110-7 ID - Schnell2003 ER - TY - JOUR AU - Holroyd, C. AU - Erdmann, R. PY - 2001 DA - 2001// TI - Protein translocation machineries of peroxisomes JO - FEBS Lett VL - 501 UR - https://doi.org/10.1016/S0014-5793(01)02617-5 DO - 10.1016/S0014-5793(01)02617-5 ID - Holroyd2001 ER - TY - JOUR AU - Lazarow, P. B. PY - 2003 DA - 2003// TI - Peroxisome biogenesis: advances and conundrums JO - Curr Opin Cell Biol VL - 15 UR - https://doi.org/10.1016/S0955-0674(03)00082-6 DO - 10.1016/S0955-0674(03)00082-6 ID - Lazarow2003 ER - TY - JOUR AU - Carvalho, A. F. AU - Costa-Rodrigues, J. AU - Correia, I. AU - Costa Pessoa, J. AU - Faria, T. Q. AU - Martins, C. L. AU - Fransen, M. AU - Sa-Miranda, C. AU - Azevedo, J. E. PY - 2006 DA - 2006// TI - The N-terminal half of the peroxisomal cycling receptor Pex5p is a natively unfolded domain JO - J Mol Biol VL - 356 UR - https://doi.org/10.1016/j.jmb.2005.12.002 DO - 10.1016/j.jmb.2005.12.002 ID - Carvalho2006 ER - TY - STD TI - Stanley WA, Wilmanns M: Dynamic architecture of the peroxisomal import receptor Pex5p.Biochem Biophys Acta, in press. ID - ref5 ER - TY - JOUR AU - D'Andrea, L. D. AU - Regan, L. PY - 2003 DA - 2003// TI - TPR proteins: the versatile helix JO - Trends Biochem Sci VL - 28 UR - https://doi.org/10.1016/j.tibs.2003.10.007 DO - 10.1016/j.tibs.2003.10.007 ID - D'Andrea2003 ER - TY - JOUR AU - Erdmann, R. AU - Schliebs, W. PY - 2005 DA - 2005// TI - Peroxisomal matrix protein import: the transient pore model JO - Nat Rev Mol Cell Biol VL - 6 UR - https://doi.org/10.1038/nrm1710 DO - 10.1038/nrm1710 ID - Erdmann2005 ER - TY - JOUR AU - Gatto, G. J. J. AU - Geisbrecht, B. V. AU - Gould, S. J. AU - Berg, J. M. PY - 2000 DA - 2000// TI - Peroxisomal targeting signal-1 recognition by the TPR domains of human PEX5 JO - Nat Struct Biol VL - 7 UR - https://doi.org/10.1038/81930 DO - 10.1038/81930 ID - Gatto2000 ER - TY - JOUR AU - Stanley, W. A. AU - Filipp, F. V. AU - Kursula, P. AU - Schuller, N. AU - Erdmann, R. AU - Schliebs, W. AU - Sattler, M. AU - Wilmanns, M. PY - 2006 DA - 2006// TI - Recognition of a functional peroxisome type 1 target by the dynamic import receptor pex5p JO - Mol Cell VL - 24 UR - https://doi.org/10.1016/j.molcel.2006.10.024 DO - 10.1016/j.molcel.2006.10.024 ID - Stanley2006 ER - TY - JOUR AU - Stanley, W. A. AU - Sokolova, A. AU - Brown, A. AU - Clarke, D. T. AU - Wilmanns, M. AU - Svergun, D. I. PY - 2004 DA - 2004// TI - Synergistic use of synchrotron radiation techniques for biological samples in solution: a case study on protein-ligand recognition by the peroxisomal import receptor Pex5p JO - J Synchrotron Radiat VL - 11 UR - https://doi.org/10.1107/S090904950402504X DO - 10.1107/S090904950402504X ID - Stanley2004 ER - TY - JOUR AU - Hayward, S. AU - Berendsen, H. J. PY - 1998 DA - 1998// TI - Systematic analysis of domain motions in proteins from conformational change: new results on citrate synthase and T4 lysozyme JO - Proteins VL - 30 UR - https://doi.org/3.0.CO;2-N DO - 3.0.CO;2-N ID - Hayward1998 ER - TY - JOUR AU - Shimozawa, N. AU - Zhang, Z. AU - Suzuki, Y. AU - Imamura, A. AU - Tsukamoto, T. AU - Osumi, T. AU - Fujiki, Y. AU - Orii, T. AU - Barth, P. G. AU - Wanders, R. J. AU - Kondo, N. PY - 1999 DA - 1999// TI - Functional heterogeneity of C-terminal peroxisome targeting signal 1 in PEX5-defective patients JO - Biochem Biophys Res Commun VL - 262 UR - https://doi.org/10.1006/bbrc.1999.1232 DO - 10.1006/bbrc.1999.1232 ID - Shimozawa1999 ER - TY - JOUR AU - Urquhart, A. J. AU - Kennedy, D. AU - Gould, S. J. AU - Crane, D. I. PY - 2000 DA - 2000// TI - Interaction of Pex5p, the type 1 peroxisome targeting signal receptor, with the peroxisomal membrane proteins Pex14p and Pex13p JO - J Biol Chem VL - 275 UR - https://doi.org/10.1074/jbc.275.6.4127 DO - 10.1074/jbc.275.6.4127 ID - Urquhart2000 ER - TY - JOUR AU - Gatto, G. J. J. AU - Maynard, E. L. AU - Guerrerio, A. L. AU - Geisbrecht, B. V. AU - Gould, S. J. AU - Berg, J. M. PY - 2003 DA - 2003// TI - Correlating structure and affinity for PEX5:PTS1 complexes JO - Biochemistry VL - 42 UR - https://doi.org/10.1021/bi027034z DO - 10.1021/bi027034z ID - Gatto2003 ER - TY - JOUR AU - Maynard, E. L. AU - Gatto, G. J. J. AU - Berg, J. M. PY - 2004 DA - 2004// TI - Pex5p binding affinities for canonical and noncanonical PTS1 peptides JO - Proteins VL - 55 UR - https://doi.org/10.1002/prot.20112 DO - 10.1002/prot.20112 ID - Maynard2004 ER - TY - JOUR AU - Clarke, D. T. AU - Jones, G. R. PY - 1999 DA - 1999// TI - Extended circular dichroism measurements using synchrotron radiation show that the assembly of clathrin coats requires no change in secondary structure JO - Biochemistry VL - 38 UR - https://doi.org/10.1021/bi990604j DO - 10.1021/bi990604j ID - Clarke1999 ER - TY - JOUR AU - Sreerama, N. AU - Woody, R. W. PY - 1993 DA - 1993// TI - A self-consistent method for the analysis of protein secondary structure from circular dichroism JO - Anal Biochem VL - 209 UR - https://doi.org/10.1006/abio.1993.1079 DO - 10.1006/abio.1993.1079 ID - Sreerama1993 ER - TY - JOUR AU - King, S. M. AU - Johnson, W. C. PY - 1999 DA - 1999// TI - Assigning secondary structure from protein coordinate data JO - Proteins VL - 35 UR - https://doi.org/3.0.CO;2-1 DO - 3.0.CO;2-1 ID - King1999 ER - TY - CHAP AU - Woody, R. W. ED - Fasman, G. D. PY - 1996 DA - 1996// TI - Theory of circular dichroism of proteins BT - Circular Dichroism and Conformational Analysis of Biomolecules PB - Plenum CY - New York UR - https://doi.org/10.1007/978-1-4757-2508-7_4 DO - 10.1007/978-1-4757-2508-7_4 ID - Woody1996 ER - TY - STD TI - Metalloprotein database and browser[http://metallo.scripps.edu] UR - http://metallo.scripps.edu ID - ref20 ER - TY - JOUR AU - Castagnetto, J. M. AU - Hennessy, S. W. AU - Roberts, V. A. AU - Getzoff, E. D. AU - Tainer, J. A. AU - Pique, M. E. PY - 2002 DA - 2002// TI - MDB: the Metalloprotein Database and Browser at The Scripps Research Institute JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/30.1.379 DO - 10.1093/nar/30.1.379 ID - Castagnetto2002 ER - TY - JOUR AU - Golovin, A. AU - Oldfield, T. J. AU - Tate, J. G. AU - Velankar, S. AU - Barton, G. J. AU - Boutselakis, H. AU - Dimitropoulos, D. AU - Fillon, J. AU - Hussain, A. AU - Ionides, J. M. AU - John, M. AU - Keller, P. A. AU - Krissinel, E. AU - McNeil, P. AU - Naim, A. AU - Newman, R. AU - Pajon, A. AU - Pineda, J. AU - Rachedi, A. AU - Copeland, J. AU - Sitnov, A. AU - Sobhany, S. AU - Suarez-Uruena, A. AU - Swaminathan, G. J. AU - Tagari, M. AU - Tromm, S. AU - Vranken, W. AU - Henrick, K. PY - 2004 DA - 2004// TI - E-MSD: an integrated data resource for bioinformatics JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh078 DO - 10.1093/nar/gkh078 ID - Golovin2004 ER - TY - JOUR AU - Kuhn, P. AU - Knapp, M. AU - Soltis, S. M. AU - Ganshaw, G. AU - Thoene, M. AU - Bott, R. PY - 1998 DA - 1998// TI - The 0.78 A structure of a serine protease: Bacillus lentus subtilisin JO - Biochemistry VL - 37 UR - https://doi.org/10.1021/bi9813983 DO - 10.1021/bi9813983 ID - Kuhn1998 ER - TY - JOUR AU - Krissinel, E. AU - Henrick, K. PY - 2004 DA - 2004// TI - Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions JO - Acta Crystallogr D Biol Crystallogr VL - 60 UR - https://doi.org/10.1107/S0907444904026460 DO - 10.1107/S0907444904026460 ID - Krissinel2004 ER - TY - JOUR AU - Kabsch, W. PY - 1993 DA - 1993// TI - Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants JO - J Appl Cryst VL - 26 UR - https://doi.org/10.1107/S0021889893005588 DO - 10.1107/S0021889893005588 ID - Kabsch1993 ER - TY - JOUR AU - Kursula, P. PY - 2004 DA - 2004// TI - XDSi – a graphical interface for the data processing program XDS JO - J Appl Cryst VL - 37 UR - https://doi.org/10.1107/S0021889804000858 DO - 10.1107/S0021889804000858 ID - Kursula2004 ER - TY - JOUR AU - Vagin, A. AU - Teplyakov, A. PY - 1997 DA - 1997// TI - MOLREP: an automated program for molecular replacement JO - J Appl Cryst VL - 30 UR - https://doi.org/10.1107/S0021889897006766 DO - 10.1107/S0021889897006766 ID - Vagin1997 ER - TY - JOUR AU - Murshudov, G. N. AU - Vagin, A. A. AU - Dodson, E. J. PY - 1997 DA - 1997// TI - Refinement of macromolecular structures by the maximum-likelihood method JO - Acta Crystallogr D Biol Crystallogr VL - 53 UR - https://doi.org/10.1107/S0907444996012255 DO - 10.1107/S0907444996012255 ID - Murshudov1997 ER - TY - JOUR AU - Emsley, P. AU - Cowtan, K. PY - 2004 DA - 2004// TI - Coot: model-building tools for molecular graphics JO - Acta Crystallogr D Biol Crystallogr VL - 60 UR - https://doi.org/10.1107/S0907444904019158 DO - 10.1107/S0907444904019158 ID - Emsley2004 ER - TY - JOUR AU - Winn, M. D. AU - Isupov, M. N. AU - Murshudov, G. N. PY - 2001 DA - 2001// TI - Use of TLS parameters to model anisotropic displacements in macromolecular refinement JO - Acta Crystallogr D Biol Crystallogr VL - 57 UR - https://doi.org/10.1107/S0907444900014736 DO - 10.1107/S0907444900014736 ID - Winn2001 ER - TY - JOUR AU - Painter, J. AU - Merritt, E. A. PY - 2006 DA - 2006// TI - Optimal description of a protein structure in terms of multiple groups undergoing TLS motion JO - Acta Crystallogr D Biol Crystallogr VL - 62 UR - https://doi.org/10.1107/S0907444906005270 DO - 10.1107/S0907444906005270 ID - Painter2006 ER - TY - JOUR AU - Jones, T. A. AU - Zou, J. Y. AU - Cowan, S. W. AU - Kjeldgaard, M. PY - 1991 DA - 1991// TI - Improved methods for building protein models in electron density maps and the location of errors in these models JO - Acta Crystallogr A VL - 47 UR - https://doi.org/10.1107/S0108767390010224 DO - 10.1107/S0108767390010224 ID - Jones1991 ER - TY - STD TI - DINO: Visualizing structural biology[http://www.dino3d.org] UR - http://www.dino3d.org ID - ref33 ER - TY - STD TI - The PyMOL molecular graphics system[http://www.pymol.org] UR - http://www.pymol.org ID - ref34 ER - TY - STD TI - POV-Ray – the persistence of vision raytracer[http://www.povray.org] UR - http://www.povray.org ID - ref35 ER - TY - STD TI - The Yale Morph server[http://molmovdb.org/morph] UR - http://molmovdb.org/morph ID - ref36 ER - TY - JOUR AU - Krebs, W. G. AU - Gerstein, M. PY - 2000 DA - 2000// TI - The morph server: a standardized system for analyzing and visualizing macromolecular motions in a database framework JO - Nucleic Acids Res VL - 28 UR - https://doi.org/10.1093/nar/28.8.1665 DO - 10.1093/nar/28.8.1665 ID - Krebs2000 ER - TY - JOUR AU - Clarke, D. T. AU - Jones, G. PY - 2004 DA - 2004// TI - CD12: a new high-flux beamline for ultraviolet and vacuum-ultraviolet circular dichroism on the SRS, Daresbury JO - J Synchrotron Radiat VL - 11 UR - https://doi.org/10.1107/S0909049503024142 DO - 10.1107/S0909049503024142 ID - Clarke2004 ER - TY - JOUR AU - Grime, G. AU - Dawson, M. AU - Marsh, M. AU - MacArthur, I. C. AU - Watt, F. PY - 1991 DA - 1991// TI - The Oxford submicron nuclear microscopy facility JO - Nucl Instr Methods Phys Res VL - B54 UR - https://doi.org/10.1016/0168-583X(91)95490-5 DO - 10.1016/0168-583X(91)95490-5 ID - Grime1991 ER - TY - JOUR AU - Garman, E. F. AU - Grime, G. W. PY - 2005 DA - 2005// TI - Elemental analysis of proteins by microPIXE JO - Prog Biophys Mol Biol VL - 89 UR - https://doi.org/10.1016/j.pbiomolbio.2004.09.005 DO - 10.1016/j.pbiomolbio.2004.09.005 ID - Garman2005 ER - TY - BOOK AU - Johansson, S. AU - Campbell, J. L. AU - Malmqvist, Q. G. PY - 1995 DA - 1995// TI - Particle induced X-ray emission spectrometry PB - Sons CY - New York ID - Johansson1995 ER - TY - JOUR AU - Berendsen, H. J. C. AU - van der Spoel, D. AU - van Drunen, R. PY - 1995 DA - 1995// TI - A message-passing parallel molecular dynamics implementation JO - Comp Phys Comm VL - 91 UR - https://doi.org/10.1016/0010-4655(95)00042-E DO - 10.1016/0010-4655(95)00042-E ID - Berendsen1995 ER - TY - JOUR AU - Lindahl, E. AU - Hess, B. AU - van der Spoel, D. PY - 2001 DA - 2001// TI - GROMACS 3.0: A package for molecular simulation and trajectory analysis JO - J Mol Mod VL - 1 ID - Lindahl2001 ER - TY - CHAP AU - Berendsen, H. J. C. AU - Postma, J. P. M. AU - van Gunsteren, W. F. AU - Hermans, J. ED - Pullman, B. PY - 1981 DA - 1981// TI - Interaction models for water in relation to protein hydration BT - Intermolecular forces PB - Reidel CY - Dordrecht UR - https://doi.org/10.1007/978-94-015-7658-1_21 DO - 10.1007/978-94-015-7658-1_21 ID - Berendsen1981 ER - TY - JOUR AU - Berendsen, H. J. C. AU - Postma, J. P. M. AU - DiNola, A. AU - van Gunsteren, W. F. AU - Haak, J. R. PY - 1984 DA - 1984// TI - Molecular dynamics with coupling to an external bath JO - J Chem Phys VL - 181 UR - https://doi.org/10.1063/1.448118 DO - 10.1063/1.448118 ID - Berendsen1984 ER - TY - JOUR AU - Hess, B. AU - Bekker, H. AU - Berendsen, H. J. C. AU - Fraaije, J. G. E. M. PY - 1997 DA - 1997// TI - LINCS: a linear constraint solver for molecular simulations JO - J Comp Chem VL - 18 UR - https://doi.org/3.0.CO;2-H DO - 3.0.CO;2-H ID - Hess1997 ER - TY - STD TI - DynDom – Protein domain motion[http://www.cmp.uea.ac.uk/dyndom/dyndomMain.do] UR - http://www.cmp.uea.ac.uk/dyndom/dyndomMain.do ID - ref47 ER -