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Table 2 Residues in the helix-helix interfaces of aquaporin crystal structures. Residue pairs that occur at the helix-helix interface in the six high-resolution aquaporin crystal structures.

From: Homology modeling of major intrinsic proteins in rice, maize and Arabidopsis: comparative analysis of transmembrane helix association and aromatic/arginine selectivity filters

Helix Pairs

Residues from the crystal structuresa

<dist.>b(Ã…)

TM1...TM2

S28...F58, G25...W48, G19...F43, T55...F81,G27...F48, G22...F62

4.86

TM1...TM3

M21...Q103, T18...Q93, T12...Q88, T48...Q126, T20...Q93, T15...Q107

5.74

 

F18...G106, F15...G96, C9...G91, F45...G129, F17...G9 6, F12...G110

4.55

 

I25...A107, I22...A97, V16...G92 L52...A130, V24...A97, V19...A111

5.70

 

I25...A110, I22...A100, V16...A95, L52...G133, V24...G100, V19...G114

5.52

TM4...TM6

T148...P218, T156...P240, S142...P212, T172...P249, T138...P208, T154...P229

5.29

 

A157...Y229, A165...Y251, G151...Y223, S181...H260, A147...Y219, G163...Y240

7.73

 

L141/I145...G217, F149/M153...G239, L135/L139...V211, L165/I169...G248, T131/I135...G207, M147/V151...G228

5.31

 

I145/L149...G221, M153/A157...G243, L139/A143...G215, I169/F173...G252, I135/L139...G211, V151/F155...G232

4.35

 

L149/V152...A225, A157/M160...G247, A143/L146...G219, F173/V176...A256, L139/V142...G215, F155/M158...A236

5.17

 

V152...A222, M160...A244, L146...G216, V176...A253, V142...A212, M158...A233

5.51

TM2...TM5

S55...L183, S45...A192, A40...L175, A78...L211, A45...L173, G59...T188

5.91

 

G59...G175,G59...G184,G44...G167, G82...G203,G49...G165,G63...G180

4.31

LB...TM4

G84...V152, A74...M160, G69...L146, G107...V176, A74...V142, G88...M158

6.96

LB...TM6

A80...A222,A70...A244,A65...G216, A103...A253,A70...A212,A84...A233

5.75

LE...TM3

G200...A107,G209...A97,A192...G92, G228...A130,A190...A97,G205...A111

4.89

LE...TM6

S198...F214, D207...P236, S190...F208, S226...F245,S188...Y204, T203...Y225

6.52

  1. a Residue pairs are given respectively for the crystal structures 1J4N, 1FX8, 1RC2, 1Z98, 2B6O and 2F2B. For each residue given for 1J4N, the equivalent residues from the other crystal structures were obtained from structure-based sequence alignment (see Additional files 1 to 8). For example, the equivalent residue pairs for (S28, F58) in 1J4N are (G25, W48) in 1FX8, (G19, F43) in 1RC2, (T55, F81) in 1Z98, (G27, F48) in 2B6O and (G22, F62) in 2F2B. Small residues (Gly/Ala/Ser/Thr) are shown in bold. b Average Cα...Cα distances calculated for residue pairs from all the six crystal structures are given.