Table 5 Examples for dealing with SSE variability in a block. Ambiguous regions are highlighted in bold and italics:
From: Occurrence of protein structure elements in conserved sequence regions
SSEs in some blocks | Given consensus | Explanation |
|---|---|---|
HLLSS LLLL HLLLL LLLL HLLHS LLLL | HL | Identical flanks, ambiguous region contains flank SSE. |
HLLLL TLLL HLLLL TLLL HLLTT TLLL | HLTL | Different flanks, ambiguous region contains only flank SSEs. |
HLLLL TLLL HLLLS TLLL HLLTT TLLL | No consensus | Different flanks, strand is not one of the flank SSEs. |
HLLSSS LLLL HLLLLL LLLL HLLHSS L LLL | No consensus | Three consecutive ambiguous positions. |
HLLTS TLLLL HLLTH TLLLL HLLTL TLLLL | No consensus | Identical flanks, ambiguous region does not contain flank SSE. |