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Table 1 Summary of crystallographic analysis.

From: High resolution crystal structure of PedB: a structural basis for the classification of pediocin-like immunity proteins

Data collection

Data set

L24M selenium data

 

Native PedB

Space group

P 62

  

P 62

Unit-cell parameters (Ã…)

a = b = 62.6 Ã…, c = 39.8 Ã…

 

a = b = 62.2 Ã…, c = 39.9 Ã…

Wavelength (Ã…)

0.97900

0.97911

0.97137

0.91841

Resolution (Ã…)

50-1.9

50-1.9

50-1.9

30-1.6

Completeness (%)a

99.4 (98.0)

99.4 (97.5)

99.2 (97.7)

98.4 (97.1)

Rsym (%)a,b

9.9 (32.0)

9.9 (34.4)

10.2 (52.4)

6.0 (19.4)

Average I/σ

20.2 (3.0)

19.1 (2.7)

17.5 (4.0)

79.8 (15.8)

Refinement statistics

Resolution range (Ã…)

   

30-1.6

Number of reflections

7,087

7,090

7,072

11,539

Total number of atoms

    

   Total

   

868

   Water

   

186

Completeness of data (%)

   

98.4

Rc (Rfree) (%)

   

19.2 (22.5)

r.m.s. deviationsd

    

   Bonds (Å)

   

0.004

   Angles (°)

   

0.945

  1. a. The number in parentheses is for the outer shell.
  2. b. Rsym = ΣhΣI|Ih,i - Ih|/ΣhΣIIh,i, where Ih is the mean intensity of the i observation of symmetry related reflections of h.
  3. c. R = Σ|Fo-Fc|/ΣFo, where Fo = Fp, and Fc is the calculated protein structure factor from the atomic model. Rfree was calculated with 10% of the reflections.
  4. d. Root mean square (r.m.s.) deviations in bond length and angles are the deviations from ideal values.