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Table 3 Major contacts of ligands with protein residues and water molecules at the active site.

From: Crystal structure of vaccinia virus uracil-DNA glycosylase reveals dimeric assembly

2OWQ:

    

Ligand

Atom

Residue

Atom

Distance (Å)

GOL301 X

O3

D68 B

O

3.37

GOL301 X

O3

Wat146

O

2.83

GOL301 X

O1

N120 B

ND2

3.21

GOL301 X

O1

Wat132

O

2.62

GOL301 X

O1

N120 B

OD1

2.86

GOL301 X

O1

F79 B

N

2.91

Cl201 X

CL

Wat134

O

3.43

Cl201 X

CL

N120 A

ND2

3.26

Cl201 X

CL

Y70 A

N

3.47

Cl201 X

CL

F79 A

N

3.35

IMD401 X

N1

D68 A

O

3.28

2OWR:

    

Ligand

Atom

Residue

Atom

Distance (Å)

GOL605

O1

Y70 A

N

2.99

GOL605

O2

F79 A

N

2.77

GOL605

O2

N120 A

OD1

2.33

GOL605

O2

N120 A

ND2

3.05

GOL612

O1

N120 C

ND2

2.85

GOL612

O3

G76 C

O

2.71

GOL616

O1

Y70 E

N

3.07

GOL616

O1

Wat166

O

3.03

GOL616

O2

N120 E

OD1

2.38

GOL616

O2

N120 E

ND2

2.99

GOL616

O2

F79 E

N

2.65

GOL619

O1

N120 G

OD1

2.69

GOL619

O1

N120G

ND2

2.84

GOL619

O3

D68 G

O

2.62

GOL619

O3

N120 G

OD1

3.01

Cl600

CL

N120 C

N

3.13

Cl600

CL

N120 C

O

2.70

Cl600

CL

GOL612

O2

2.46