Skip to main content

Table 8 Number of correct predictions of every model. Parenthetical data correspond to the number of prediction separated by less than 0.3 kcal/mol from the experimental data.

From: Identification of DNA-binding protein target sequences by physical effective energy functions: free energy analysis of lambda repressor-DNA complexes.

 

ΔG calc < 1.0, ΔG exp < 1.0

ΔG calc > 1.0, ΔG exp > 1.0

ΔG calc ≶ 1.0, ΔG exp ≷ 1.0, D < 0.5

tot

(D < 0.5)

MM/DDDC-OONS (1r)

10

23

2

35

(7)

MM/DDDC-OONS (2r)

15

24

0

39

(11)

MM/DDDC-OONS (4r)

16

22

1

39

(13)

MM/DDDC-OONS (8r)

14

23

1

38

(16)

MM/DDDC-OONS(+HB) (1r)

8

23

2

33

(9)

MM/DDDC-OONS(+HB) (2r)

14

23

1

38

(8)

MM/DDDC-OONS(+HB) (4r)

17

21

1

39

(10)

MM/DDDC-OONS(+HB) (8r)

15

22

2

39

(13)

MM/DDDC-HP (1r)

11

23

1

35

(12)

MM/DDDC-HP (2r)

16

21

4

41

(11)

MM/DDDC-HP (4r)

13

21

1

35

(12)

MM/DDDC-HP (8r)

13

24

0

37

(12)

MM/DDDC-HP(+HB) (1r)

12

23

1

36

(11)

MM/DDDC-HP(+HB) (2r)

15

22

3

40

(11)

MM/DDDC-HP(+HB) (4r)

13

21

2

36

(10)

MM/DDDC-HP(+HB) (8r)

16

24

1

38

(13)

MM/GBSA

13

24

1

38

(10)

MM/GBSA(+HB)

13

24

2

39

(13)