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Figure 3 | BMC Structural Biology

Figure 3

From: Structural deformation upon protein-protein interaction: A structural alphabet approach

Figure 3

Comparison of local rmsd and rmsd dev . a) Fragments that are encoded by the same structural letter in the bound and unbound forms. The rmsd dev in this case is the rmsd intra , which measures the intrinsic variability of structural letters. b) Fragments that are encoded by different structural letters in the bound and unbound forms, in the case where the structural letter substitution is isolated or at the extremity of a stretch of substitutions. c) Fragments that are encoded by different structural letters in the bound and unbound forms, in the case where the structural letter substitution appears in a stretch of substitution. The red line indicates the equality between local rmsd and rmsd dev .

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