Table 2 Comparison of PIADA with other algorithms. This table shows comparison between the number of protein interacting residues found by PIADA and either by 'maximal distance method', 'delta ASA method' or interactions present in iPFAM. One of the reasons for the large discrepancy in the results obtained by PIADA and by iPFAM database is the fact that iPFAM results cover only the residues that are inside PFAM domains.
PIADA | Number of residues found by both algorithms | Number of residues not found by other algorithms | Number of residues not found by PIADA |
|---|---|---|---|
Atom distance | 382 175 | 12 181 | 5 051 |
I PFAM (Inside PFAM domains) | 259 649 | 134 707 | 74 991 |
Delta ASA | 387 187 | 7 169 | 51 928 |