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Table 2 First eight eigenvalues and cosine contents for the trajectories 2, 4, 5, 9, 11 and 12

From: Multiple molecular dynamics simulation of the isoforms of human translation elongation factor 1A reveals reversible fluctuations between "open" and "closed" conformations and suggests specific for eEF1A1 affinity for Ca2+-calmodulin

Isoform

eEF1A1

eEF1A2

Trajectory; time interval

2; 2500–10466 ps

4; 5440–10514 ps

5; 3960–9920 ps

9; 1070–10000 ps

11; 3780–10417 ps

12; 1130–10197 ps

Number of eigenvector

Eigenvalue

1

2.92577

1.44506

2.00650

2.27184

2.30533

2.15311

2

1.68434

0.86893

1.36554

1.28574

0.78048

1.77254

3

0.68870

0.38034

0.47608

0.73461

0.46551

0.64839

4

0.46802

0.27333

0.29183

0.50336

0.29763

0.46346

5

0.32693

0.23964

0.26331

0.42775

0.27844

0.43969

6

0.28298

0.18535

0.22431

0.23191

0.20223

0.27086

7

0.18644

0.14662

0.15777

0.20346

0.18002

0.25996

8

0.16773

0.10737

0.13055

0.17295

0.16660

0.22564

 

Cosine content

1

0.03374

0.60652

0.63817

0.62554

0.89852

0.50174

2

0.02503

0.07350

0.52379

0.04251

0.22506

0.27044

3

0.00185

0.18572

0.25656

0.06206

0.00093

0.15005

4

0.00111

0.04537

0.30264

0.07576

3.209·10-7

0.02686

5

0.02844

0.00041

0.23341

0.19980

0.116878

0.00641

6

0.02734

0.03769

0.12111

0.07724

0.00179

0.10954

7

0.11791

0.00358

0.02747

0.02094

0.11159

0.02160

8

0.02168

0.16876

0.01118

0.08322

0.00296

0.11837