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Table 3 All-Atom RMSD for RAPPER Models for 15 Combinations of Template to Target.

From: Comparative modelling by restraint-based conformational sampling

 

Family

Combination

Asp

Glob

Parv

Cyt3

MHC_II_N

Fabp

Flav

Phoslip

Responce_reg

Ghf22

1

2.07 (99)

1.37 (100)

1.34 (100)

1.11 (100)

1.95 (96)

2.22 (100)

1.50 (100)

2.85 (100)

3.28 (100)

2.61 (100)

2

2.71 (100)

2.87 (100)

1.68 (99)

2.25 (99)

4.62 (98)

2.10 (100)

1.58 (99)

2.73 (100)

7.37 (100)

2.42 (100)

3

3.77 (100)

2.88 (100)

1.38 (100)

2.20 (100)

4.20 (98)

2.56 (100)

5.80 (100)

2.57 (100)

4.34 (100)

2.26 (100)

4

3.47 (100)

2.95 (99)

1.40 (100)

3.94 (99)

4.37 (96)

2.60 (100)

6.49 (98)

2.85 (100)

3.82 (99)

2.51 (100)

5

2.47 (99)

1.62 (100)

1.30 (96)

1.70 (100)

2.74 (98)

2.16 (100)

1.55 (100)

2.70 (100)

3.60 (98)

2.51 (100)

6

2.71 (99)

1.68 (98)

1.18 (95)

1.25 (99)

2.18 (98)

2.16 (100)

1.51 (99)

2.64 (100)

8.40 (88)

2.43 (100)

7

3.08 (99)

1.59 (100)

1.52 (100)

1.46 (100)

1.83 (95)

2.13 (98)

1.70 (100)

2.67 (100)

3.46 (100)

2.52 (100)

8

3.36 (100)

2.94 (98)

1.26 (96)

1.94 (98)

4.00 (95)

2.28 (100)

2.09 (100)

2.50 (100)

3.87 (99)

2.31 (100)

9

3.13 (99)

2.68 (100)

1.63 (93)

2.35 (99)

4.56 (98)

2.19 (98)

2.18 (99)

2.83 (100)

3.77 (100)

2.17 (100)

10

3.71 (99)

2.63 (100)

1.40 (100)

2.27 (98)

4.34 (98)

2.30 (98)

3.45 (93)

2.52 (100)

3.90 (100)

2.17 (100)

11

2.30 (99)

1.74 (98)

1.17 (95)

1.75 (99)

1.98 (95)

2.20 (99)

1.55 (99)

2.65 (100)

3.52 (98)

2.41 (100)

12

2.68 (99)

1.68 (100)

1.53 (93)

2.01 (100)

2.88 (98)

2.05 (98)

1.78 (100)

2.64 (100)

3.72 (99)

2.56 (100)

13

2.80 (99)

2.08 (96)

1.33 (93)

1.77 (99)

2.24 (98)

2.17 (98)

1.78 (99)

2.64 (100)

3.46 (100)

2.50 (100)

14

3.08 (99)

2.52 (96)

1.37 (93)

2.16 (100)

4.11 (95)

2.14 (98)

2.22 (100)

2.78 (100)

3.18 (67)

2.20 (100)

15

2.52 (99)

1.99 (100)

1.35 (93)

1.75 (99)

1.98 (95)

2.01 (98)

1.83 (99)

2.98 (100)

3.50 (100)

2.43 (100)

  1. The all-atom RMSD in Ã…ngstrom's for RAPPER models built in the standard mode for ten families. The combinations of template to target are as indicated in Table 3.2. To provide a fair comparison the percentage of residues used in the RMSD calculation is given in parentheses.