Table 4 All-Atom RMSD for Models Built Using Different RAPPER Restraint Derivations and Templates and for Models Built by Modeller.

Family

RAPPER CA-trace

RAPPER optimal spatial restraints

RAPPER closest template

RAPPER all templates

CHORAL/ANDANTE + RAPPER

RAPPER all templates sampling by PID

MODELLER closest

MODELLER all templates

Aldosered

1.23

1.47

1.54

1.59

1.41

1.45

1.45

1.23

Asp

1.74

1.89

1.97

2.05

1.86

1.90

1.92

1.74

Az

1.31

1.37

1.48

1.36

1.35

1.25

1.60

1.31

Blm

1.54

1.55

2.00

1.67

1.83

1.95

2.00

1.47

Cyt3

1.21

1.12

1.08

1.67

1.18

1.15

1.26

1.19

Cytc

1.45

1.52

1.48

2.16

1.54

1.46

1.48

1.48

Egf

1.07

2.16

1.83

3.43

2.22

2.14

2.11

2.20

Fabp

1.37

1.98

2.20

2.05

2.35

2.21

2.14

2.13

Flav

1.24

1.49

1.45

1.75

1.44

1.69

1.61

1.63

Fn3

1.37

1.60

2.11

1.98

2.14

2.24

2.03

1.97

Ghf22

1.32

2.07

2.58

2.38

2.39

2.45

2.67

2.03

Glob

1.33

1.42

1.36

1.97

1.38

1.43

1.35

1.54

Gluts

1.25

2.88

3.19

3.66

2.92

2.84

3.19

2.89

Gtp

1.33

2.31

2.44

2.62

2.38

2.50

2.44

2.30

Igvar-h

1.52

1.72

2.01

3.24

2.49

2.54

2.31

2.98

Igvar-l

1.44

1.47

1.60

2.04

1.54

1.61

1.50

1.51

Ltn

1.53

1.36

1.36

1.63

1.34

1.41

1.27

1.34

MHC

1.58

1.77

1.93

1.91

1.76

1.82

2.04

2.12

Parv

1.18

1.40

1.23

1.33

1.32

1.27

1.27

1.14

Phc

1.14

1.56

1.68

1.59

1.53

1.58

1.99

1.74

Phos

1.34

2.95

2.84

2.65

2.67

2.54

2.67

2.37

Resp

1.23

2.69

3.14

3.41

3.06

3.35

3.03

3.26

Sh3

1.38

2.09

2.22

2.24

2.21

2.18

2.50

2.07

Tim

1.40

1.24

1.42

1.63

1.26

1.33

1.41

1.37

Mean

1.35

1.80

1.92

2.17

1.90

1.93

1.97

1.88

Family

RAPPER CA-trace

RAPPER optimal spatial restraints

RAPPER closest template

RAPPER all templates

CHORAL/ANDANTE + RAPPER

RAPPER all templates sampling by PID

MODELLER closest

MODELLER all templates

A

B

C

D

E

F

G

H