Structural pattern matching of nonribosomal peptides

BMC Structural Biology

Table 1 Number of nodes and edges of the CG constructed with classical and new building rules

pattern	peptide	# CG nodes	# CG edges
P1	G1	13/12	22/19
P2	G1	16/16	43/29
P3	G1	35/30	210/100
P3	G2	25/15	100/0
P4	G2	10/8	14/9
Ala-1^(a)	Ala^(b)	73/73	1918/286
(X)19^(c)	Ala^(b)	380/346	53010/3948

Patterns P1–P4 and peptides G1–G2 refer to Figure 1. In all examples, k is equal to the pattern size. In columns 3 and 4, data shown in regular and bold font concern respectively the classical and modified CG building rules.
^(a)linear pattern of size 19 corresponding to alamethicin F50 without the last monomer
^(b)alamethicin F50 [NORINE:NOR00007]
^(c)linear pattern of 19 'X' monomers

ISSN: 1472-6807